Hb_001232_060

Information

Type -
Description -
Location Contig1232: 23078-23422
Sequence    

Annotation

kegg
ID rcu:RCOM_1495350
description hypothetical protein
nr
ID XP_002516081.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RQR2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1495350 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001232_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012055_070 0.1079365126 - - calcium ion binding protein, putative [Ricinus communis]
3 Hb_000160_010 0.112338417 - - PREDICTED: uncharacterized protein LOC105638816 [Jatropha curcas]
4 Hb_001269_180 0.1250103889 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
5 Hb_001276_030 0.1367904734 - - PREDICTED: uncharacterized protein LOC104881333 [Vitis vinifera]
6 Hb_004586_440 0.1500344753 - - Blue copper protein precursor, putative [Ricinus communis]
7 Hb_000815_220 0.1513534258 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001225_050 0.1536633683 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
9 Hb_001369_480 0.1544935128 transcription factor TF Family: NAC hypothetical protein POPTR_0012s14660g [Populus trichocarpa]
10 Hb_005440_040 0.1608708479 - - PREDICTED: microtubule-associated protein 70-5 [Jatropha curcas]
11 Hb_050160_010 0.1612639404 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
12 Hb_000227_360 0.1646806773 - - PREDICTED: mavicyanin [Jatropha curcas]
13 Hb_001456_030 0.1683727374 - - PREDICTED: bifunctional pinoresinol-lariciresinol reductase 2 [Vitis vinifera]
14 Hb_011224_070 0.1695264266 - - PREDICTED: solute carrier family 35 member E3 [Jatropha curcas]
15 Hb_005116_150 0.1711008452 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
16 Hb_000608_090 0.1711092858 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003376_060 0.171779751 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9 isoform X1 [Jatropha curcas]
18 Hb_000414_090 0.1736003816 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007113_060 0.175883247 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
20 Hb_116701_010 0.1760220748 - - hypothetical protein POPTR_0005s19410g [Populus trichocarpa]

Gene co-expression network

sample Hb_001232_060 Hb_001232_060 Hb_012055_070 Hb_012055_070 Hb_001232_060--Hb_012055_070 Hb_000160_010 Hb_000160_010 Hb_001232_060--Hb_000160_010 Hb_001269_180 Hb_001269_180 Hb_001232_060--Hb_001269_180 Hb_001276_030 Hb_001276_030 Hb_001232_060--Hb_001276_030 Hb_004586_440 Hb_004586_440 Hb_001232_060--Hb_004586_440 Hb_000815_220 Hb_000815_220 Hb_001232_060--Hb_000815_220 Hb_005116_150 Hb_005116_150 Hb_012055_070--Hb_005116_150 Hb_007113_060 Hb_007113_060 Hb_012055_070--Hb_007113_060 Hb_031984_020 Hb_031984_020 Hb_012055_070--Hb_031984_020 Hb_002200_030 Hb_002200_030 Hb_012055_070--Hb_002200_030 Hb_005440_040 Hb_005440_040 Hb_012055_070--Hb_005440_040 Hb_000160_010--Hb_001276_030 Hb_000160_010--Hb_001269_180 Hb_001369_480 Hb_001369_480 Hb_000160_010--Hb_001369_480 Hb_000160_010--Hb_004586_440 Hb_000633_030 Hb_000633_030 Hb_000160_010--Hb_000633_030 Hb_001269_180--Hb_001369_480 Hb_000336_120 Hb_000336_120 Hb_001269_180--Hb_000336_120 Hb_006717_060 Hb_006717_060 Hb_001269_180--Hb_006717_060 Hb_000531_030 Hb_000531_030 Hb_001269_180--Hb_000531_030 Hb_001269_180--Hb_005116_150 Hb_012114_090 Hb_012114_090 Hb_001269_180--Hb_012114_090 Hb_001276_030--Hb_000633_030 Hb_001276_030--Hb_001269_180 Hb_001456_030 Hb_001456_030 Hb_001276_030--Hb_001456_030 Hb_011082_030 Hb_011082_030 Hb_001276_030--Hb_011082_030 Hb_000608_090 Hb_000608_090 Hb_004586_440--Hb_000608_090 Hb_004586_440--Hb_001369_480 Hb_000362_030 Hb_000362_030 Hb_004586_440--Hb_000362_030 Hb_071079_040 Hb_071079_040 Hb_004586_440--Hb_071079_040 Hb_031330_010 Hb_031330_010 Hb_004586_440--Hb_031330_010 Hb_011224_070 Hb_011224_070 Hb_004586_440--Hb_011224_070 Hb_000815_220--Hb_001276_030 Hb_000815_220--Hb_000160_010 Hb_000805_050 Hb_000805_050 Hb_000815_220--Hb_000805_050 Hb_103225_040 Hb_103225_040 Hb_000815_220--Hb_103225_040 Hb_152868_020 Hb_152868_020 Hb_000815_220--Hb_152868_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.73254 0.406843 4.06206 26.6667 0.21395 0.490771
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.211986 0 0.0944803 11.6038

CAGE analysis