Hb_011082_030

Information

Type -
Description -
Location Contig11082: 90623-92192
Sequence    

Annotation

kegg
ID rcu:RCOM_0852210
description hypothetical protein
nr
ID XP_002517393.1
description hypothetical protein RCOM_0852210 [Ricinus communis]
swissprot
ID F4IQJ4
description Gibberellin-regulated protein 11 OS=Arabidopsis thaliana GN=GASA11 PE=3 SV=1
trembl
ID B9RUE8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0852210 PE=4 SV=1
Gene Ontology
ID GO:0003824
description gibberellin-regulated protein 14-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011082_030 0.0 - - hypothetical protein RCOM_0852210 [Ricinus communis]
2 Hb_049955_010 0.0879175972 - - hypothetical protein EUGRSUZ_B00742 [Eucalyptus grandis]
3 Hb_057862_010 0.0889471682 - - protein binding protein, putative [Ricinus communis]
4 Hb_185608_010 0.0899984797 - - hypothetical protein POPTR_0004s22210g [Populus trichocarpa]
5 Hb_162450_010 0.0948381479 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
6 Hb_011344_040 0.0986219768 - - PREDICTED: 21 kDa protein [Jatropha curcas]
7 Hb_009151_010 0.10264909 - - Peroxidase 3 [Morus notabilis]
8 Hb_007113_060 0.1043903646 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
9 Hb_000057_090 0.106189683 - - hypothetical protein RCOM_1494490 [Ricinus communis]
10 Hb_005269_060 0.108931413 - - PREDICTED: rac-like GTP-binding protein RAC2 [Cicer arietinum]
11 Hb_002311_030 0.1098496124 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002740_140 0.1122230865 - - hypothetical protein L484_022679 [Morus notabilis]
13 Hb_007382_110 0.1137153593 - - PREDICTED: bidirectional sugar transporter N3 [Jatropha curcas]
14 Hb_010193_020 0.1137315769 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
15 Hb_005532_080 0.1140467574 - - PREDICTED: heparanase-like protein 2 [Jatropha curcas]
16 Hb_166360_010 0.1144846597 - - hypothetical protein POPTR_0010s12130g [Populus trichocarpa]
17 Hb_002067_070 0.1149551071 - - hypothetical protein JCGZ_19254 [Jatropha curcas]
18 Hb_061256_020 0.1160833465 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
19 Hb_093084_030 0.1171373486 - - oleosin2 [Plukenetia volubilis]
20 Hb_000343_070 0.1188978393 - - hypothetical protein JCGZ_06265 [Jatropha curcas]

Gene co-expression network

sample Hb_011082_030 Hb_011082_030 Hb_049955_010 Hb_049955_010 Hb_011082_030--Hb_049955_010 Hb_057862_010 Hb_057862_010 Hb_011082_030--Hb_057862_010 Hb_185608_010 Hb_185608_010 Hb_011082_030--Hb_185608_010 Hb_162450_010 Hb_162450_010 Hb_011082_030--Hb_162450_010 Hb_011344_040 Hb_011344_040 Hb_011082_030--Hb_011344_040 Hb_009151_010 Hb_009151_010 Hb_011082_030--Hb_009151_010 Hb_049955_010--Hb_185608_010 Hb_049955_010--Hb_162450_010 Hb_005269_060 Hb_005269_060 Hb_049955_010--Hb_005269_060 Hb_049955_010--Hb_057862_010 Hb_000343_070 Hb_000343_070 Hb_049955_010--Hb_000343_070 Hb_005532_080 Hb_005532_080 Hb_049955_010--Hb_005532_080 Hb_057862_010--Hb_185608_010 Hb_057862_010--Hb_162450_010 Hb_002740_140 Hb_002740_140 Hb_057862_010--Hb_002740_140 Hb_057862_010--Hb_011344_040 Hb_093084_030 Hb_093084_030 Hb_057862_010--Hb_093084_030 Hb_185608_010--Hb_162450_010 Hb_185608_010--Hb_011344_040 Hb_007382_110 Hb_007382_110 Hb_185608_010--Hb_007382_110 Hb_003858_010 Hb_003858_010 Hb_185608_010--Hb_003858_010 Hb_166360_010 Hb_166360_010 Hb_162450_010--Hb_166360_010 Hb_004218_270 Hb_004218_270 Hb_162450_010--Hb_004218_270 Hb_162450_010--Hb_093084_030 Hb_162450_010--Hb_005532_080 Hb_010193_020 Hb_010193_020 Hb_011344_040--Hb_010193_020 Hb_000227_360 Hb_000227_360 Hb_011344_040--Hb_000227_360 Hb_011344_040--Hb_003858_010 Hb_001357_290 Hb_001357_290 Hb_011344_040--Hb_001357_290 Hb_002311_030 Hb_002311_030 Hb_009151_010--Hb_002311_030 Hb_004162_200 Hb_004162_200 Hb_009151_010--Hb_004162_200 Hb_005116_150 Hb_005116_150 Hb_009151_010--Hb_005116_150 Hb_002067_070 Hb_002067_070 Hb_009151_010--Hb_002067_070 Hb_007113_060 Hb_007113_060 Hb_009151_010--Hb_007113_060 Hb_000531_030 Hb_000531_030 Hb_009151_010--Hb_000531_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.267112 0.966317 0 0.0239231
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0157484 0.481319

CAGE analysis