Hb_001276_030

Information

Type -
Description -
Location Contig1276: 35123-38817
Sequence    

Annotation

kegg
ID vvi:104881333
description uncharacterized LOC104881333
nr
ID XP_010659532.1
description PREDICTED: uncharacterized protein LOC104881333 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID D7T357
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0064g00410 PE=4 SV=1
Gene Ontology
ID GO:0016787
description leucine-rich repeat containing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08407: 38434-38615
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001276_030 0.0 - - PREDICTED: uncharacterized protein LOC104881333 [Vitis vinifera]
2 Hb_000160_010 0.0583473139 - - PREDICTED: uncharacterized protein LOC105638816 [Jatropha curcas]
3 Hb_000633_030 0.1312388935 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
4 Hb_001232_060 0.1367904734 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001269_180 0.1467961111 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
6 Hb_001456_030 0.1598337859 - - PREDICTED: bifunctional pinoresinol-lariciresinol reductase 2 [Vitis vinifera]
7 Hb_011082_030 0.1614761547 - - hypothetical protein RCOM_0852210 [Ricinus communis]
8 Hb_010193_020 0.16279708 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
9 Hb_050160_010 0.1635485099 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
10 Hb_000414_090 0.1635867139 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000805_050 0.1639952605 - - zinc transporter, putative [Ricinus communis]
12 Hb_169018_010 0.1643961229 - - hypothetical protein POPTR_0014s00800g [Populus trichocarpa]
13 Hb_000729_040 0.1658717702 - - xyloglucan endotransglucosylase/hydrolase protein 10 precursor [Populus trichocarpa]
14 Hb_031579_010 0.1663152933 - - JHL22C18.10 [Jatropha curcas]
15 Hb_011344_040 0.1673399392 - - PREDICTED: 21 kDa protein [Jatropha curcas]
16 Hb_000086_460 0.1688129019 - - PREDICTED: protein NRT1/ PTR FAMILY 5.2-like [Jatropha curcas]
17 Hb_004586_440 0.1689787352 - - Blue copper protein precursor, putative [Ricinus communis]
18 Hb_000462_120 0.1711636964 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
19 Hb_000445_410 0.1725363084 - - hypothetical protein EUGRSUZ_F02776 [Eucalyptus grandis]
20 Hb_000014_210 0.1728257219 - - amine oxidase, partial [Aphanizomenon flos-aquae]

Gene co-expression network

sample Hb_001276_030 Hb_001276_030 Hb_000160_010 Hb_000160_010 Hb_001276_030--Hb_000160_010 Hb_000633_030 Hb_000633_030 Hb_001276_030--Hb_000633_030 Hb_001232_060 Hb_001232_060 Hb_001276_030--Hb_001232_060 Hb_001269_180 Hb_001269_180 Hb_001276_030--Hb_001269_180 Hb_001456_030 Hb_001456_030 Hb_001276_030--Hb_001456_030 Hb_011082_030 Hb_011082_030 Hb_001276_030--Hb_011082_030 Hb_000160_010--Hb_001269_180 Hb_000160_010--Hb_001232_060 Hb_001369_480 Hb_001369_480 Hb_000160_010--Hb_001369_480 Hb_004586_440 Hb_004586_440 Hb_000160_010--Hb_004586_440 Hb_000160_010--Hb_000633_030 Hb_000413_030 Hb_000413_030 Hb_000633_030--Hb_000413_030 Hb_001269_160 Hb_001269_160 Hb_000633_030--Hb_001269_160 Hb_005056_040 Hb_005056_040 Hb_000633_030--Hb_005056_040 Hb_000633_030--Hb_001456_030 Hb_031579_010 Hb_031579_010 Hb_000633_030--Hb_031579_010 Hb_064047_020 Hb_064047_020 Hb_000633_030--Hb_064047_020 Hb_012055_070 Hb_012055_070 Hb_001232_060--Hb_012055_070 Hb_001232_060--Hb_001269_180 Hb_001232_060--Hb_004586_440 Hb_000815_220 Hb_000815_220 Hb_001232_060--Hb_000815_220 Hb_001269_180--Hb_001369_480 Hb_000336_120 Hb_000336_120 Hb_001269_180--Hb_000336_120 Hb_006717_060 Hb_006717_060 Hb_001269_180--Hb_006717_060 Hb_000531_030 Hb_000531_030 Hb_001269_180--Hb_000531_030 Hb_005116_150 Hb_005116_150 Hb_001269_180--Hb_005116_150 Hb_012114_090 Hb_012114_090 Hb_001269_180--Hb_012114_090 Hb_005616_020 Hb_005616_020 Hb_001456_030--Hb_005616_020 Hb_003376_060 Hb_003376_060 Hb_001456_030--Hb_003376_060 Hb_000227_360 Hb_000227_360 Hb_001456_030--Hb_000227_360 Hb_000462_120 Hb_000462_120 Hb_001456_030--Hb_000462_120 Hb_001104_060 Hb_001104_060 Hb_001456_030--Hb_001104_060 Hb_000964_080 Hb_000964_080 Hb_001456_030--Hb_000964_080 Hb_049955_010 Hb_049955_010 Hb_011082_030--Hb_049955_010 Hb_057862_010 Hb_057862_010 Hb_011082_030--Hb_057862_010 Hb_185608_010 Hb_185608_010 Hb_011082_030--Hb_185608_010 Hb_162450_010 Hb_162450_010 Hb_011082_030--Hb_162450_010 Hb_011344_040 Hb_011344_040 Hb_011082_030--Hb_011344_040 Hb_009151_010 Hb_009151_010 Hb_011082_030--Hb_009151_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.139291 0 0.458116 4.22936 0 0.130896
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.120089 1.65809

CAGE analysis