Hb_000805_050

Information

Type -
Description -
Location Contig805: 30079-31659
Sequence    

Annotation

kegg
ID rcu:RCOM_0734880
description zinc transporter, putative (EC:1.3.1.74)
nr
ID XP_002520540.1
description zinc transporter, putative [Ricinus communis]
swissprot
ID Q94DG6
description Zinc transporter 1 OS=Oryza sativa subsp. japonica GN=ZIP1 PE=1 SV=1
trembl
ID B9S3H1
description Zinc transporter, putative OS=Ricinus communis GN=RCOM_0734880 PE=4 SV=1
Gene Ontology
ID GO:0016020
description zinc transporter 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000805_050 0.0 - - zinc transporter, putative [Ricinus communis]
2 Hb_006634_120 0.0846646866 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
3 Hb_000037_150 0.0923115344 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
4 Hb_005056_040 0.0940726974 - - hypothetical protein POPTR_0007s14730g [Populus trichocarpa]
5 Hb_064445_040 0.0953075493 - - hypothetical protein POPTR_0005s09430g [Populus trichocarpa]
6 Hb_001477_050 0.0970188161 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
7 Hb_024074_030 0.1007854913 - - hypothetical protein CISIN_1g043166mg [Citrus sinensis]
8 Hb_019953_010 0.1022275915 - - hypothetical protein CICLE_v10019877mg [Citrus clementina]
9 Hb_033149_010 0.1056352958 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
10 Hb_000696_130 0.106672178 - - nucleic acid binding protein, putative [Ricinus communis]
11 Hb_000007_190 0.1088075903 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 10-like [Jatropha curcas]
12 Hb_010288_010 0.1101459736 - - Beta-glucosidase, putative [Ricinus communis]
13 Hb_002636_170 0.1109436731 - - DNA-3-methyladenine glycosylase, putative [Ricinus communis]
14 Hb_000392_500 0.1112722878 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002660_180 0.1142900215 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000173_140 0.1184837502 - - EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao]
17 Hb_011912_010 0.1195662465 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
18 Hb_000413_030 0.1206689375 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
19 Hb_000594_010 0.1218008544 - - PREDICTED: lysine histidine transporter-like 6 isoform X3 [Populus euphratica]
20 Hb_000633_030 0.1229122117 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_000805_050 Hb_000805_050 Hb_006634_120 Hb_006634_120 Hb_000805_050--Hb_006634_120 Hb_000037_150 Hb_000037_150 Hb_000805_050--Hb_000037_150 Hb_005056_040 Hb_005056_040 Hb_000805_050--Hb_005056_040 Hb_064445_040 Hb_064445_040 Hb_000805_050--Hb_064445_040 Hb_001477_050 Hb_001477_050 Hb_000805_050--Hb_001477_050 Hb_024074_030 Hb_024074_030 Hb_000805_050--Hb_024074_030 Hb_006634_120--Hb_064445_040 Hb_006634_120--Hb_024074_030 Hb_010288_010 Hb_010288_010 Hb_006634_120--Hb_010288_010 Hb_000007_190 Hb_000007_190 Hb_006634_120--Hb_000007_190 Hb_019953_010 Hb_019953_010 Hb_006634_120--Hb_019953_010 Hb_000392_500 Hb_000392_500 Hb_006634_120--Hb_000392_500 Hb_011912_010 Hb_011912_010 Hb_000037_150--Hb_011912_010 Hb_002660_180 Hb_002660_180 Hb_000037_150--Hb_002660_180 Hb_000037_150--Hb_024074_030 Hb_000037_150--Hb_001477_050 Hb_004846_110 Hb_004846_110 Hb_000037_150--Hb_004846_110 Hb_000696_130 Hb_000696_130 Hb_000037_150--Hb_000696_130 Hb_005056_040--Hb_001477_050 Hb_002750_030 Hb_002750_030 Hb_005056_040--Hb_002750_030 Hb_005056_040--Hb_000037_150 Hb_000836_640 Hb_000836_640 Hb_005056_040--Hb_000836_640 Hb_005056_040--Hb_024074_030 Hb_001500_090 Hb_001500_090 Hb_005056_040--Hb_001500_090 Hb_064445_040--Hb_000392_500 Hb_064445_040--Hb_000007_190 Hb_064445_040--Hb_010288_010 Hb_135737_010 Hb_135737_010 Hb_064445_040--Hb_135737_010 Hb_103225_040 Hb_103225_040 Hb_064445_040--Hb_103225_040 Hb_001477_050--Hb_000836_640 Hb_001477_050--Hb_024074_030 Hb_001477_050--Hb_002750_030 Hb_000162_010 Hb_000162_010 Hb_001477_050--Hb_000162_010 Hb_024074_030--Hb_002660_180 Hb_024074_030--Hb_000696_130 Hb_002636_170 Hb_002636_170 Hb_024074_030--Hb_002636_170 Hb_001307_180 Hb_001307_180 Hb_024074_030--Hb_001307_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0219911 0 0.0512941 1.69974 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0159271 0.810616

CAGE analysis