Hb_006663_110

Information

Type -
Description -
Location Contig6663: 140405-140964
Sequence    

Annotation

kegg
ID sly:101262013
description U-box domain-containing protein 35-like
nr
ID XP_010429418.1
description PREDICTED: U-box domain-containing protein 34-like [Camelina sativa]
swissprot
ID Q9FKG5
description U-box domain-containing protein 51 OS=Arabidopsis thaliana GN=PUB51 PE=2 SV=2
trembl
ID M1B2H9
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400013683 PE=4 SV=1
Gene Ontology
ID GO:0004715
description u-box domain-containing protein 35 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006663_110 0.0 - - PREDICTED: U-box domain-containing protein 34-like [Camelina sativa]
2 Hb_183671_010 0.1490882505 - - serine carboxypeptidase, putative [Ricinus communis]
3 Hb_001369_680 0.1938822654 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
4 Hb_115832_010 0.2147967658 - - transcription factor, putative [Ricinus communis]
5 Hb_001688_090 0.225797272 - - alcohol dehydrogenase 7 [Vitis vinifera]
6 Hb_001391_050 0.2350520703 - - PREDICTED: probable carboxylesterase 18 [Jatropha curcas]
7 Hb_005601_030 0.2432939901 - - organic anion transporter, putative [Ricinus communis]
8 Hb_000313_330 0.2494355834 - - PREDICTED: glucan endo-1,3-beta-glucosidase [Jatropha curcas]
9 Hb_002641_170 0.2835893238 - - zinc finger protein, putative [Ricinus communis]
10 Hb_000236_170 0.2917157429 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
11 Hb_148209_030 0.292206059 - - hypothetical protein VITISV_017120 [Vitis vinifera]
12 Hb_047560_010 0.2993521282 - - PREDICTED: GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]
13 Hb_002374_540 0.3009559835 - - RecName: Full=Esterase; AltName: Full=Early nodule-specific protein homolog; AltName: Full=Latex allergen Hev b 13; AltName: Allergen=Hev b 13; Flags: Precursor [Hevea brasiliensis]
14 Hb_001396_270 0.3015243703 - - 4-coumarate--CoA ligase family protein [Populus trichocarpa]
15 Hb_146255_010 0.3064428331 - - PREDICTED: uncharacterized protein LOC105643649 [Jatropha curcas]
16 Hb_067118_010 0.3077475794 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
17 Hb_000302_070 0.313053439 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
18 Hb_002003_100 0.3134264163 - - -
19 Hb_003988_020 0.3160755099 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH85-like [Populus euphratica]
20 Hb_004690_020 0.3164758411 - - PREDICTED: MLP-like protein 328 [Jatropha curcas]

Gene co-expression network

sample Hb_006663_110 Hb_006663_110 Hb_183671_010 Hb_183671_010 Hb_006663_110--Hb_183671_010 Hb_001369_680 Hb_001369_680 Hb_006663_110--Hb_001369_680 Hb_115832_010 Hb_115832_010 Hb_006663_110--Hb_115832_010 Hb_001688_090 Hb_001688_090 Hb_006663_110--Hb_001688_090 Hb_001391_050 Hb_001391_050 Hb_006663_110--Hb_001391_050 Hb_005601_030 Hb_005601_030 Hb_006663_110--Hb_005601_030 Hb_183671_010--Hb_115832_010 Hb_183671_010--Hb_005601_030 Hb_019181_020 Hb_019181_020 Hb_183671_010--Hb_019181_020 Hb_183671_010--Hb_001391_050 Hb_120820_010 Hb_120820_010 Hb_183671_010--Hb_120820_010 Hb_001369_680--Hb_001688_090 Hb_001396_270 Hb_001396_270 Hb_001369_680--Hb_001396_270 Hb_002374_540 Hb_002374_540 Hb_001369_680--Hb_002374_540 Hb_005843_020 Hb_005843_020 Hb_001369_680--Hb_005843_020 Hb_012799_010 Hb_012799_010 Hb_001369_680--Hb_012799_010 Hb_115832_010--Hb_005601_030 Hb_000345_180 Hb_000345_180 Hb_115832_010--Hb_000345_180 Hb_115832_010--Hb_001391_050 Hb_007617_040 Hb_007617_040 Hb_115832_010--Hb_007617_040 Hb_005951_010 Hb_005951_010 Hb_001688_090--Hb_005951_010 Hb_001688_090--Hb_012799_010 Hb_003893_060 Hb_003893_060 Hb_001688_090--Hb_003893_060 Hb_001688_090--Hb_001396_270 Hb_001688_090--Hb_005843_020 Hb_001391_050--Hb_005601_030 Hb_047560_010 Hb_047560_010 Hb_001391_050--Hb_047560_010 Hb_000107_260 Hb_000107_260 Hb_001391_050--Hb_000107_260 Hb_000375_140 Hb_000375_140 Hb_001391_050--Hb_000375_140 Hb_005601_030--Hb_019181_020 Hb_005601_030--Hb_047560_010 Hb_000105_110 Hb_000105_110 Hb_005601_030--Hb_000105_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0645105 0 0.0534322 0.17208 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis