Hb_001369_680

Information

Type -
Description -
Location Contig1369: 538978-539718
Sequence    

Annotation

kegg
ID pop:POPTR_0012s14410g
description POPTRDRAFT_806670; hypothetical protein
nr
ID XP_012090405.1
description PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JEY2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26223 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_680 0.0 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
2 Hb_001688_090 0.1478880447 - - alcohol dehydrogenase 7 [Vitis vinifera]
3 Hb_006663_110 0.1938822654 - - PREDICTED: U-box domain-containing protein 34-like [Camelina sativa]
4 Hb_001396_270 0.2038133229 - - 4-coumarate--CoA ligase family protein [Populus trichocarpa]
5 Hb_002374_540 0.2346790245 - - RecName: Full=Esterase; AltName: Full=Early nodule-specific protein homolog; AltName: Full=Latex allergen Hev b 13; AltName: Allergen=Hev b 13; Flags: Precursor [Hevea brasiliensis]
6 Hb_005843_020 0.2349355847 - - multidrug resistance pump, putative [Ricinus communis]
7 Hb_012799_010 0.2450749811 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 isoform X2 [Jatropha curcas]
8 Hb_146255_010 0.2506250435 - - PREDICTED: uncharacterized protein LOC105643649 [Jatropha curcas]
9 Hb_003988_020 0.2531860771 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH85-like [Populus euphratica]
10 Hb_002641_170 0.2548328871 - - zinc finger protein, putative [Ricinus communis]
11 Hb_001741_110 0.2577297836 rubber biosynthesis Gene Name: REF7 REF/SRPP-like protein [Glycine soja]
12 Hb_002228_130 0.2611157819 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000042_120 0.2670765306 - - PREDICTED: uncharacterized protein LOC105632800 [Jatropha curcas]
14 Hb_003893_060 0.2685687151 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006012_030 0.2690085563 - - hypothetical protein POPTR_0008s02380g [Populus trichocarpa]
16 Hb_004690_020 0.2736128601 - - PREDICTED: MLP-like protein 328 [Jatropha curcas]
17 Hb_002003_100 0.2764382087 - - -
18 Hb_152640_010 0.2780172576 - - PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
19 Hb_005914_220 0.2787620628 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
20 Hb_000100_060 0.2790716688 - - PREDICTED: probable glucan endo-1,3-beta-glucosidase A6 [Populus euphratica]

Gene co-expression network

sample Hb_001369_680 Hb_001369_680 Hb_001688_090 Hb_001688_090 Hb_001369_680--Hb_001688_090 Hb_006663_110 Hb_006663_110 Hb_001369_680--Hb_006663_110 Hb_001396_270 Hb_001396_270 Hb_001369_680--Hb_001396_270 Hb_002374_540 Hb_002374_540 Hb_001369_680--Hb_002374_540 Hb_005843_020 Hb_005843_020 Hb_001369_680--Hb_005843_020 Hb_012799_010 Hb_012799_010 Hb_001369_680--Hb_012799_010 Hb_005951_010 Hb_005951_010 Hb_001688_090--Hb_005951_010 Hb_001688_090--Hb_012799_010 Hb_003893_060 Hb_003893_060 Hb_001688_090--Hb_003893_060 Hb_001688_090--Hb_001396_270 Hb_001688_090--Hb_005843_020 Hb_183671_010 Hb_183671_010 Hb_006663_110--Hb_183671_010 Hb_115832_010 Hb_115832_010 Hb_006663_110--Hb_115832_010 Hb_006663_110--Hb_001688_090 Hb_001391_050 Hb_001391_050 Hb_006663_110--Hb_001391_050 Hb_005601_030 Hb_005601_030 Hb_006663_110--Hb_005601_030 Hb_006012_030 Hb_006012_030 Hb_001396_270--Hb_006012_030 Hb_005914_220 Hb_005914_220 Hb_001396_270--Hb_005914_220 Hb_003988_020 Hb_003988_020 Hb_001396_270--Hb_003988_020 Hb_000042_120 Hb_000042_120 Hb_001396_270--Hb_000042_120 Hb_001396_270--Hb_002374_540 Hb_000270_590 Hb_000270_590 Hb_001396_270--Hb_000270_590 Hb_146255_010 Hb_146255_010 Hb_002374_540--Hb_146255_010 Hb_001741_110 Hb_001741_110 Hb_002374_540--Hb_001741_110 Hb_000313_080 Hb_000313_080 Hb_002374_540--Hb_000313_080 Hb_000087_010 Hb_000087_010 Hb_002374_540--Hb_000087_010 Hb_005357_170 Hb_005357_170 Hb_002374_540--Hb_005357_170 Hb_006816_240 Hb_006816_240 Hb_005843_020--Hb_006816_240 Hb_004690_020 Hb_004690_020 Hb_005843_020--Hb_004690_020 Hb_009662_040 Hb_009662_040 Hb_005843_020--Hb_009662_040 Hb_005116_090 Hb_005116_090 Hb_005843_020--Hb_005116_090 Hb_005843_020--Hb_003893_060 Hb_000635_020 Hb_000635_020 Hb_005843_020--Hb_000635_020 Hb_010812_080 Hb_010812_080 Hb_012799_010--Hb_010812_080 Hb_012545_020 Hb_012545_020 Hb_012799_010--Hb_012545_020 Hb_007227_020 Hb_007227_020 Hb_012799_010--Hb_007227_020 Hb_000679_180 Hb_000679_180 Hb_012799_010--Hb_000679_180 Hb_006663_120 Hb_006663_120 Hb_012799_010--Hb_006663_120 Hb_001002_010 Hb_001002_010 Hb_012799_010--Hb_001002_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.376335 0 0.404585 2.25483 0.116508 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis