Hb_004690_020

Information

Type -
Description -
Location Contig4690: 17764-18624
Sequence    

Annotation

kegg
ID pop:POPTR_0008s13030g
description POPTRDRAFT_719860; putative major latex family protein
nr
ID XP_012072242.1
description PREDICTED: MLP-like protein 328 [Jatropha curcas]
swissprot
ID Q9ZVF3
description MLP-like protein 328 OS=Arabidopsis thaliana GN=MLP328 PE=2 SV=1
trembl
ID A0A067L1V0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04717 PE=4 SV=1
Gene Ontology
ID GO:0050896
description mlp-like protein 328

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44185: 17772-18638
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004690_020 0.0 - - PREDICTED: MLP-like protein 328 [Jatropha curcas]
2 Hb_124677_070 0.0973338354 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
3 Hb_000802_040 0.1032047105 - - PREDICTED: probable inositol transporter 2 [Jatropha curcas]
4 Hb_026196_020 0.1042270308 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
5 Hb_000742_040 0.1073510638 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
6 Hb_188742_010 0.1117442811 - - hypothetical protein POPTR_0019s12290g [Populus trichocarpa]
7 Hb_002999_020 0.1153770331 - - PREDICTED: ribonuclease 3-like [Jatropha curcas]
8 Hb_010327_040 0.1170613924 - - hypothetical protein POPTR_0004s17300g [Populus trichocarpa]
9 Hb_001369_490 0.117297455 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 33 [Jatropha curcas]
10 Hb_009662_040 0.1204479943 - - PREDICTED: uncharacterized protein LOC105114791 [Populus euphratica]
11 Hb_001416_120 0.124619655 - - caspase, putative [Ricinus communis]
12 Hb_016734_110 0.1285367713 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
13 Hb_000796_110 0.1297899348 - - PREDICTED: probable pectinesterase 53 [Populus euphratica]
14 Hb_004693_040 0.131740334 - - -
15 Hb_153258_030 0.1326238042 - - hypothetical protein RCOM_0853150 [Ricinus communis]
16 Hb_000815_010 0.1354930211 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105117338 [Populus euphratica]
17 Hb_005666_010 0.1375757175 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
18 Hb_018910_010 0.1423548641 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like isoform X3 [Citrus sinensis]
19 Hb_000666_040 0.1425091767 - - PREDICTED: MLP-like protein 34 [Vitis vinifera]
20 Hb_001623_560 0.1444011059 - - late embryogenesis abundant protein group 9 protein [Arachis hypogaea]

Gene co-expression network

sample Hb_004690_020 Hb_004690_020 Hb_124677_070 Hb_124677_070 Hb_004690_020--Hb_124677_070 Hb_000802_040 Hb_000802_040 Hb_004690_020--Hb_000802_040 Hb_026196_020 Hb_026196_020 Hb_004690_020--Hb_026196_020 Hb_000742_040 Hb_000742_040 Hb_004690_020--Hb_000742_040 Hb_188742_010 Hb_188742_010 Hb_004690_020--Hb_188742_010 Hb_002999_020 Hb_002999_020 Hb_004690_020--Hb_002999_020 Hb_124677_070--Hb_000742_040 Hb_124677_070--Hb_026196_020 Hb_124677_070--Hb_000802_040 Hb_124677_070--Hb_188742_010 Hb_124677_070--Hb_002999_020 Hb_010327_040 Hb_010327_040 Hb_124677_070--Hb_010327_040 Hb_000802_040--Hb_010327_040 Hb_000802_040--Hb_026196_020 Hb_001416_120 Hb_001416_120 Hb_000802_040--Hb_001416_120 Hb_000802_040--Hb_002999_020 Hb_004693_040 Hb_004693_040 Hb_000802_040--Hb_004693_040 Hb_026196_020--Hb_188742_010 Hb_026196_020--Hb_010327_040 Hb_026196_020--Hb_000742_040 Hb_000896_030 Hb_000896_030 Hb_026196_020--Hb_000896_030 Hb_000742_040--Hb_002999_020 Hb_000796_110 Hb_000796_110 Hb_000742_040--Hb_000796_110 Hb_016734_110 Hb_016734_110 Hb_000742_040--Hb_016734_110 Hb_153258_030 Hb_153258_030 Hb_000742_040--Hb_153258_030 Hb_000742_040--Hb_000802_040 Hb_000141_050 Hb_000141_050 Hb_188742_010--Hb_000141_050 Hb_188742_010--Hb_000896_030 Hb_188742_010--Hb_000742_040 Hb_012675_010 Hb_012675_010 Hb_188742_010--Hb_012675_010 Hb_002999_020--Hb_153258_030 Hb_002999_020--Hb_000796_110 Hb_002999_020--Hb_001416_120 Hb_002999_020--Hb_016734_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.19565 0.0803275 63.3774 226.968 0 0.14513
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0912443 0 0.126651 0 10.7997

CAGE analysis