Hb_183671_010

Information

Type -
Description -
Location Contig183671: 3471-4028
Sequence    

Annotation

kegg
ID rcu:RCOM_1077960
description serine carboxypeptidase, putative (EC:3.4.16.5)
nr
ID XP_002514835.1
description serine carboxypeptidase, putative [Ricinus communis]
swissprot
ID Q8L7B2
description Serine carboxypeptidase-like 20 OS=Arabidopsis thaliana GN=SCPL20 PE=2 SV=2
trembl
ID B9RM66
description Carboxypeptidase OS=Ricinus communis GN=RCOM_1077960 PE=3 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like 20

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_183671_010 0.0 - - serine carboxypeptidase, putative [Ricinus communis]
2 Hb_115832_010 0.1373806705 - - transcription factor, putative [Ricinus communis]
3 Hb_006663_110 0.1490882505 - - PREDICTED: U-box domain-containing protein 34-like [Camelina sativa]
4 Hb_005601_030 0.1520309884 - - organic anion transporter, putative [Ricinus communis]
5 Hb_019181_020 0.1876345786 - - PREDICTED: uncharacterized protein LOC105763068 [Gossypium raimondii]
6 Hb_001391_050 0.207531547 - - PREDICTED: probable carboxylesterase 18 [Jatropha curcas]
7 Hb_120820_010 0.2411670527 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
8 Hb_047560_010 0.2559715113 - - PREDICTED: GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]
9 Hb_003159_060 0.2744632399 - - Uncharacterized protein TCM_001961 [Theobroma cacao]
10 Hb_000345_180 0.2779102947 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001898_170 0.2793847976 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000302_070 0.2854011625 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
13 Hb_000105_110 0.2995463745 - - hypothetical protein, partial [Fervidibacteria bacterium SCGC AAA471-D06]
14 Hb_001369_680 0.3023618328 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
15 Hb_001688_090 0.3027479878 - - alcohol dehydrogenase 7 [Vitis vinifera]
16 Hb_007413_020 0.3069618793 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001301_140 0.3129325954 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
18 Hb_000108_060 0.3161897058 - - hypothetical protein POPTR_0010s07820g [Populus trichocarpa]
19 Hb_010174_050 0.3193841103 - - PREDICTED: probable pectate lyase 5 [Populus euphratica]
20 Hb_000723_070 0.3244555293 - - PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_183671_010 Hb_183671_010 Hb_115832_010 Hb_115832_010 Hb_183671_010--Hb_115832_010 Hb_006663_110 Hb_006663_110 Hb_183671_010--Hb_006663_110 Hb_005601_030 Hb_005601_030 Hb_183671_010--Hb_005601_030 Hb_019181_020 Hb_019181_020 Hb_183671_010--Hb_019181_020 Hb_001391_050 Hb_001391_050 Hb_183671_010--Hb_001391_050 Hb_120820_010 Hb_120820_010 Hb_183671_010--Hb_120820_010 Hb_115832_010--Hb_005601_030 Hb_115832_010--Hb_006663_110 Hb_000345_180 Hb_000345_180 Hb_115832_010--Hb_000345_180 Hb_115832_010--Hb_001391_050 Hb_007617_040 Hb_007617_040 Hb_115832_010--Hb_007617_040 Hb_001369_680 Hb_001369_680 Hb_006663_110--Hb_001369_680 Hb_001688_090 Hb_001688_090 Hb_006663_110--Hb_001688_090 Hb_006663_110--Hb_001391_050 Hb_006663_110--Hb_005601_030 Hb_005601_030--Hb_001391_050 Hb_005601_030--Hb_019181_020 Hb_047560_010 Hb_047560_010 Hb_005601_030--Hb_047560_010 Hb_000105_110 Hb_000105_110 Hb_005601_030--Hb_000105_110 Hb_019181_020--Hb_120820_010 Hb_019181_020--Hb_115832_010 Hb_010174_050 Hb_010174_050 Hb_019181_020--Hb_010174_050 Hb_001301_140 Hb_001301_140 Hb_019181_020--Hb_001301_140 Hb_001391_050--Hb_047560_010 Hb_000107_260 Hb_000107_260 Hb_001391_050--Hb_000107_260 Hb_000375_140 Hb_000375_140 Hb_001391_050--Hb_000375_140 Hb_120820_010--Hb_005601_030 Hb_120820_010--Hb_115832_010 Hb_120820_010--Hb_010174_050 Hb_000362_140 Hb_000362_140 Hb_120820_010--Hb_000362_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.12951 0 0.156273 0.216071 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis