Hb_001301_140

Information

Type -
Description -
Location Contig1301: 108919-111819
Sequence    

Annotation

kegg
ID rcu:RCOM_1077370
description hypothetical protein
nr
ID XP_012067299.1
description PREDICTED: TMV resistance protein N-like [Jatropha curcas]
swissprot
ID Q9XGM3
description Disease resistance protein RPS4 OS=Arabidopsis thaliana GN=RPS4 PE=1 SV=1
trembl
ID B9RM27
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1077370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001301_140 0.0 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
2 Hb_000345_180 0.1095344303 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007943_170 0.1182149907 - - PREDICTED: rho guanine nucleotide exchange factor 8-like [Jatropha curcas]
4 Hb_001488_080 0.1239320185 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
5 Hb_000365_150 0.1720047827 - - GTP binding protein, putative [Ricinus communis]
6 Hb_003159_060 0.1793890976 - - Uncharacterized protein TCM_001961 [Theobroma cacao]
7 Hb_007558_110 0.2069450075 - - PREDICTED: uncharacterized protein LOC105649093 [Jatropha curcas]
8 Hb_000176_040 0.2080433856 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR3 isoform X2 [Jatropha curcas]
9 Hb_000035_190 0.2145826762 - - conserved hypothetical protein [Ricinus communis]
10 Hb_027445_070 0.2191701456 - - PREDICTED: denticleless protein homolog [Jatropha curcas]
11 Hb_074674_010 0.2203377812 - - Cell division cycle protein cdt2, putative [Ricinus communis]
12 Hb_001384_030 0.2208860847 - - PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]
13 Hb_000362_140 0.2214936183 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 61-like [Jatropha curcas]
14 Hb_023386_070 0.2242226363 - - PREDICTED: probable pectinesterase 68 [Jatropha curcas]
15 Hb_001205_280 0.2248413873 - - PREDICTED: probable polyol transporter 6 [Jatropha curcas]
16 Hb_061361_010 0.2248509386 - - kinase, putative [Ricinus communis]
17 Hb_000025_770 0.226218499 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
18 Hb_010369_020 0.2288398704 - - hypothetical protein JCGZ_21088 [Jatropha curcas]
19 Hb_003368_070 0.2309891702 - - PREDICTED: uncharacterized protein LOC105109387 [Populus euphratica]
20 Hb_005116_030 0.2311308096 - - PREDICTED: uncharacterized protein LOC105650003 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001301_140 Hb_001301_140 Hb_000345_180 Hb_000345_180 Hb_001301_140--Hb_000345_180 Hb_007943_170 Hb_007943_170 Hb_001301_140--Hb_007943_170 Hb_001488_080 Hb_001488_080 Hb_001301_140--Hb_001488_080 Hb_000365_150 Hb_000365_150 Hb_001301_140--Hb_000365_150 Hb_003159_060 Hb_003159_060 Hb_001301_140--Hb_003159_060 Hb_007558_110 Hb_007558_110 Hb_001301_140--Hb_007558_110 Hb_000345_180--Hb_003159_060 Hb_000345_180--Hb_000365_150 Hb_001898_170 Hb_001898_170 Hb_000345_180--Hb_001898_170 Hb_000345_180--Hb_007943_170 Hb_001514_170 Hb_001514_170 Hb_000345_180--Hb_001514_170 Hb_007943_170--Hb_001488_080 Hb_007943_170--Hb_000365_150 Hb_007943_170--Hb_007558_110 Hb_000621_100 Hb_000621_100 Hb_007943_170--Hb_000621_100 Hb_006120_140 Hb_006120_140 Hb_007943_170--Hb_006120_140 Hb_001488_080--Hb_007558_110 Hb_000035_190 Hb_000035_190 Hb_001488_080--Hb_000035_190 Hb_007120_020 Hb_007120_020 Hb_001488_080--Hb_007120_020 Hb_005066_050 Hb_005066_050 Hb_001488_080--Hb_005066_050 Hb_000365_150--Hb_003159_060 Hb_000438_030 Hb_000438_030 Hb_000365_150--Hb_000438_030 Hb_147060_010 Hb_147060_010 Hb_000365_150--Hb_147060_010 Hb_003159_060--Hb_001898_170 Hb_001258_070 Hb_001258_070 Hb_003159_060--Hb_001258_070 Hb_003159_060--Hb_001514_170 Hb_001864_040 Hb_001864_040 Hb_007558_110--Hb_001864_040 Hb_007558_110--Hb_000035_190 Hb_001454_180 Hb_001454_180 Hb_007558_110--Hb_001454_180 Hb_162378_020 Hb_162378_020 Hb_007558_110--Hb_162378_020 Hb_004963_020 Hb_004963_020 Hb_007558_110--Hb_004963_020 Hb_011063_030 Hb_011063_030 Hb_007558_110--Hb_011063_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0111814 0 0.0673427 0.0347689 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00796941 0

CAGE analysis