Hb_001514_170

Information

Type -
Description -
Location Contig1514: 166575-168736
Sequence    

Annotation

kegg
ID rcu:RCOM_1588500
description cyclin A, putative
nr
ID XP_012068270.1
description PREDICTED: putative cyclin-A3-1 [Jatropha curcas]
swissprot
ID Q3ECW2
description Cyclin-A3-4 OS=Arabidopsis thaliana GN=CYCA3-4 PE=1 SV=1
trembl
ID A0A067KZN5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16068 PE=3 SV=1
Gene Ontology
ID GO:0005634
description cyclin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12837: 166520-167502 , PASA_asmbl_12838: 167317-167517 , PASA_asmbl_12839: 167910-168426
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001514_170 0.0 - - PREDICTED: putative cyclin-A3-1 [Jatropha curcas]
2 Hb_005332_030 0.1488461394 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001699_270 0.1503127819 - - PREDICTED: uncharacterized protein LOC105628996 [Jatropha curcas]
4 Hb_002686_320 0.1530278666 - - syntaxin, putative [Ricinus communis]
5 Hb_004055_090 0.1534907696 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
6 Hb_000522_160 0.1543016705 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
7 Hb_000977_190 0.1551612215 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006693_010 0.1580800716 - - PREDICTED: uncharacterized protein LOC105628875 [Jatropha curcas]
9 Hb_000661_150 0.1594088985 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
10 Hb_089140_070 0.1637868813 - - PREDICTED: uncharacterized protein LOC105637961 [Jatropha curcas]
11 Hb_001322_160 0.1642897867 - - hypothetical protein JCGZ_03472 [Jatropha curcas]
12 Hb_000140_200 0.1667359602 - - PREDICTED: uncharacterized protein LOC105642928 [Jatropha curcas]
13 Hb_006588_100 0.1685421051 - - conserved hypothetical protein [Ricinus communis]
14 Hb_020025_030 0.1700781219 transcription factor TF Family: PHD PREDICTED: protein Jade-1 [Populus euphratica]
15 Hb_000062_280 0.1712039351 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
16 Hb_001052_020 0.1728336981 - - hypothetical protein JCGZ_26487 [Jatropha curcas]
17 Hb_004884_170 0.175402922 - - hypothetical protein AALP_AA1G067000 [Arabis alpina]
18 Hb_001950_090 0.1760710753 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
19 Hb_000962_060 0.1763247617 - - PREDICTED: uncharacterized protein LOC105646517 [Jatropha curcas]
20 Hb_000098_270 0.1771850793 - - PREDICTED: 22.0 kDa class IV heat shock protein [Jatropha curcas]

Gene co-expression network

sample Hb_001514_170 Hb_001514_170 Hb_005332_030 Hb_005332_030 Hb_001514_170--Hb_005332_030 Hb_001699_270 Hb_001699_270 Hb_001514_170--Hb_001699_270 Hb_002686_320 Hb_002686_320 Hb_001514_170--Hb_002686_320 Hb_004055_090 Hb_004055_090 Hb_001514_170--Hb_004055_090 Hb_000522_160 Hb_000522_160 Hb_001514_170--Hb_000522_160 Hb_000977_190 Hb_000977_190 Hb_001514_170--Hb_000977_190 Hb_159809_040 Hb_159809_040 Hb_005332_030--Hb_159809_040 Hb_005332_030--Hb_000977_190 Hb_005332_030--Hb_000522_160 Hb_003656_080 Hb_003656_080 Hb_005332_030--Hb_003656_080 Hb_006810_040 Hb_006810_040 Hb_005332_030--Hb_006810_040 Hb_001263_030 Hb_001263_030 Hb_005332_030--Hb_001263_030 Hb_000661_150 Hb_000661_150 Hb_001699_270--Hb_000661_150 Hb_001307_150 Hb_001307_150 Hb_001699_270--Hb_001307_150 Hb_000480_060 Hb_000480_060 Hb_001699_270--Hb_000480_060 Hb_001950_090 Hb_001950_090 Hb_001699_270--Hb_001950_090 Hb_003847_060 Hb_003847_060 Hb_001699_270--Hb_003847_060 Hb_000345_450 Hb_000345_450 Hb_001699_270--Hb_000345_450 Hb_009113_020 Hb_009113_020 Hb_002686_320--Hb_009113_020 Hb_002686_320--Hb_000977_190 Hb_000538_290 Hb_000538_290 Hb_002686_320--Hb_000538_290 Hb_009545_060 Hb_009545_060 Hb_002686_320--Hb_009545_060 Hb_000701_020 Hb_000701_020 Hb_002686_320--Hb_000701_020 Hb_006588_100 Hb_006588_100 Hb_002686_320--Hb_006588_100 Hb_000853_250 Hb_000853_250 Hb_004055_090--Hb_000853_250 Hb_004055_090--Hb_000522_160 Hb_003754_020 Hb_003754_020 Hb_004055_090--Hb_003754_020 Hb_000345_230 Hb_000345_230 Hb_004055_090--Hb_000345_230 Hb_002276_250 Hb_002276_250 Hb_004055_090--Hb_002276_250 Hb_004055_090--Hb_000977_190 Hb_000522_160--Hb_006810_040 Hb_006693_010 Hb_006693_010 Hb_000522_160--Hb_006693_010 Hb_000522_160--Hb_159809_040 Hb_001971_040 Hb_001971_040 Hb_000522_160--Hb_001971_040 Hb_001348_100 Hb_001348_100 Hb_000522_160--Hb_001348_100 Hb_000977_190--Hb_159809_040 Hb_000977_190--Hb_000538_290 Hb_000140_200 Hb_000140_200 Hb_000977_190--Hb_000140_200 Hb_020025_030 Hb_020025_030 Hb_000977_190--Hb_020025_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.161763 0.0145497 1.89438 2.298 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0585852 0.466405 0.195539

CAGE analysis