Hb_007943_170

Information

Type -
Description -
Location Contig7943: 142272-144451
Sequence    

Annotation

kegg
ID pop:POPTR_0018s08900g
description POPTRDRAFT_809226; hypothetical protein
nr
ID XP_012076712.1
description PREDICTED: rho guanine nucleotide exchange factor 8-like [Jatropha curcas]
swissprot
ID Q9LV40
description Rho guanine nucleotide exchange factor 8 OS=Arabidopsis thaliana GN=ROPGEF8 PE=1 SV=1
trembl
ID A0A067KFD3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07259 PE=4 SV=1
Gene Ontology
ID GO:0044464
description rho guanine nucleotide exchange factor 8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007943_170 0.0 - - PREDICTED: rho guanine nucleotide exchange factor 8-like [Jatropha curcas]
2 Hb_001488_080 0.094043158 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
3 Hb_001301_140 0.1182149907 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
4 Hb_000365_150 0.1382054367 - - GTP binding protein, putative [Ricinus communis]
5 Hb_007558_110 0.1736883638 - - PREDICTED: uncharacterized protein LOC105649093 [Jatropha curcas]
6 Hb_000621_100 0.1826266273 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006120_140 0.189908655 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
8 Hb_000025_770 0.1930739978 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
9 Hb_061361_010 0.1940121587 - - kinase, putative [Ricinus communis]
10 Hb_005066_050 0.1953894476 - - -
11 Hb_000000_040 0.1969391837 - - PREDICTED: inactive protein kinase SELMODRAFT_444075-like [Jatropha curcas]
12 Hb_000035_190 0.1978428939 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000345_180 0.2008731077 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000176_040 0.2030087083 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR3 isoform X2 [Jatropha curcas]
15 Hb_000321_040 0.2035432319 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 5 [Jatropha curcas]
16 Hb_010369_020 0.2093651462 - - hypothetical protein JCGZ_21088 [Jatropha curcas]
17 Hb_020273_020 0.2105514039 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_027445_070 0.2115121185 - - PREDICTED: denticleless protein homolog [Jatropha curcas]
19 Hb_000397_140 0.2141607198 transcription factor TF Family: PLATZ hypothetical protein JCGZ_16980 [Jatropha curcas]
20 Hb_036182_010 0.2148690473 - - hypothetical protein POPTR_0473s00220g [Populus trichocarpa]

Gene co-expression network

sample Hb_007943_170 Hb_007943_170 Hb_001488_080 Hb_001488_080 Hb_007943_170--Hb_001488_080 Hb_001301_140 Hb_001301_140 Hb_007943_170--Hb_001301_140 Hb_000365_150 Hb_000365_150 Hb_007943_170--Hb_000365_150 Hb_007558_110 Hb_007558_110 Hb_007943_170--Hb_007558_110 Hb_000621_100 Hb_000621_100 Hb_007943_170--Hb_000621_100 Hb_006120_140 Hb_006120_140 Hb_007943_170--Hb_006120_140 Hb_001488_080--Hb_001301_140 Hb_001488_080--Hb_007558_110 Hb_000035_190 Hb_000035_190 Hb_001488_080--Hb_000035_190 Hb_007120_020 Hb_007120_020 Hb_001488_080--Hb_007120_020 Hb_005066_050 Hb_005066_050 Hb_001488_080--Hb_005066_050 Hb_000345_180 Hb_000345_180 Hb_001301_140--Hb_000345_180 Hb_001301_140--Hb_000365_150 Hb_003159_060 Hb_003159_060 Hb_001301_140--Hb_003159_060 Hb_001301_140--Hb_007558_110 Hb_000365_150--Hb_000345_180 Hb_000365_150--Hb_003159_060 Hb_000438_030 Hb_000438_030 Hb_000365_150--Hb_000438_030 Hb_147060_010 Hb_147060_010 Hb_000365_150--Hb_147060_010 Hb_001864_040 Hb_001864_040 Hb_007558_110--Hb_001864_040 Hb_007558_110--Hb_000035_190 Hb_001454_180 Hb_001454_180 Hb_007558_110--Hb_001454_180 Hb_162378_020 Hb_162378_020 Hb_007558_110--Hb_162378_020 Hb_004963_020 Hb_004963_020 Hb_007558_110--Hb_004963_020 Hb_011063_030 Hb_011063_030 Hb_007558_110--Hb_011063_030 Hb_000621_100--Hb_006120_140 Hb_000000_040 Hb_000000_040 Hb_000621_100--Hb_000000_040 Hb_000025_770 Hb_000025_770 Hb_000621_100--Hb_000025_770 Hb_000321_040 Hb_000321_040 Hb_000621_100--Hb_000321_040 Hb_061361_010 Hb_061361_010 Hb_000621_100--Hb_061361_010 Hb_000621_100--Hb_005066_050 Hb_006120_140--Hb_000000_040 Hb_020273_020 Hb_020273_020 Hb_006120_140--Hb_020273_020 Hb_006120_140--Hb_000321_040 Hb_001890_040 Hb_001890_040 Hb_006120_140--Hb_001890_040 Hb_006120_140--Hb_005066_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0157379 0 0.153286 0.0476389 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0271447 0

CAGE analysis