Hb_000365_150

Information

Type -
Description -
Location Contig365: 156121-156962
Sequence    

Annotation

kegg
ID rcu:RCOM_1323410
description GTP binding protein, putative
nr
ID XP_002519979.1
description GTP binding protein, putative [Ricinus communis]
swissprot
ID Q9SSC7
description Protein LURP-one-related 5 OS=Arabidopsis thaliana GN=At1g80120 PE=1 SV=1
trembl
ID B9S1W0
description GTP binding protein, putative OS=Ricinus communis GN=RCOM_1323410 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000365_150 0.0 - - GTP binding protein, putative [Ricinus communis]
2 Hb_007943_170 0.1382054367 - - PREDICTED: rho guanine nucleotide exchange factor 8-like [Jatropha curcas]
3 Hb_001301_140 0.1720047827 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
4 Hb_000345_180 0.174197705 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003159_060 0.1835148699 - - Uncharacterized protein TCM_001961 [Theobroma cacao]
6 Hb_000438_030 0.1917743823 - - -
7 Hb_147060_010 0.1974502032 - - PREDICTED: probable glutathione S-transferase parC [Populus euphratica]
8 Hb_010812_130 0.1983090604 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
9 Hb_001269_120 0.198692002 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF003-like [Jatropha curcas]
10 Hb_009535_010 0.1990113951 - - PREDICTED: DNA replication licensing factor MCM4 [Jatropha curcas]
11 Hb_003010_050 0.202306596 - - -
12 Hb_046615_040 0.2048648709 - - unnamed protein product [Vitis vinifera]
13 Hb_151094_020 0.2050164686 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Prunus mume]
14 Hb_007113_030 0.2070534586 - - -
15 Hb_002498_290 0.2080654129 - - PREDICTED: autophagy-related protein 8C-like isoform X2 [Elaeis guineensis]
16 Hb_005306_060 0.2087835527 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
17 Hb_001258_070 0.2092769243 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000163_020 0.210313757 - - -
19 Hb_003549_010 0.2118400055 - - PREDICTED: uncharacterized protein LOC105647434 [Jatropha curcas]
20 Hb_000679_280 0.2142255468 - - hypothetical protein POPTR_0006s27120g [Populus trichocarpa]

Gene co-expression network

sample Hb_000365_150 Hb_000365_150 Hb_007943_170 Hb_007943_170 Hb_000365_150--Hb_007943_170 Hb_001301_140 Hb_001301_140 Hb_000365_150--Hb_001301_140 Hb_000345_180 Hb_000345_180 Hb_000365_150--Hb_000345_180 Hb_003159_060 Hb_003159_060 Hb_000365_150--Hb_003159_060 Hb_000438_030 Hb_000438_030 Hb_000365_150--Hb_000438_030 Hb_147060_010 Hb_147060_010 Hb_000365_150--Hb_147060_010 Hb_001488_080 Hb_001488_080 Hb_007943_170--Hb_001488_080 Hb_007943_170--Hb_001301_140 Hb_007558_110 Hb_007558_110 Hb_007943_170--Hb_007558_110 Hb_000621_100 Hb_000621_100 Hb_007943_170--Hb_000621_100 Hb_006120_140 Hb_006120_140 Hb_007943_170--Hb_006120_140 Hb_001301_140--Hb_000345_180 Hb_001301_140--Hb_001488_080 Hb_001301_140--Hb_003159_060 Hb_001301_140--Hb_007558_110 Hb_000345_180--Hb_003159_060 Hb_001898_170 Hb_001898_170 Hb_000345_180--Hb_001898_170 Hb_000345_180--Hb_007943_170 Hb_001514_170 Hb_001514_170 Hb_000345_180--Hb_001514_170 Hb_003159_060--Hb_001898_170 Hb_001258_070 Hb_001258_070 Hb_003159_060--Hb_001258_070 Hb_003159_060--Hb_001514_170 Hb_000438_030--Hb_147060_010 Hb_010812_130 Hb_010812_130 Hb_000438_030--Hb_010812_130 Hb_046615_040 Hb_046615_040 Hb_000438_030--Hb_046615_040 Hb_003010_050 Hb_003010_050 Hb_000438_030--Hb_003010_050 Hb_151094_020 Hb_151094_020 Hb_000438_030--Hb_151094_020 Hb_005306_060 Hb_005306_060 Hb_000438_030--Hb_005306_060 Hb_147060_010--Hb_010812_130 Hb_147060_010--Hb_046615_040 Hb_147060_010--Hb_003010_050 Hb_147060_010--Hb_151094_020 Hb_147060_010--Hb_005306_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.069797 0 0.496049 0.261961 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.206181 0

CAGE analysis