Hb_046615_040

Information

Type -
Description -
Location Contig46615: 33102-33603
Sequence    

Annotation

kegg
ID pop:POPTR_0011s03490g
description hypothetical protein
nr
ID CBI40949.3
description unnamed protein product [Vitis vinifera]
swissprot
ID B9SBV6
description Probable terpene synthase 3 OS=Ricinus communis GN=TPS3 PE=3 SV=1
trembl
ID U5FYS0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s03490g PE=4 SV=1
Gene Ontology
ID GO:0010333
description ( )-nerolidol synthase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_046615_040 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_003010_050 0.0217381571 - - -
3 Hb_010812_130 0.0252854554 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
4 Hb_147060_010 0.0284786124 - - PREDICTED: probable glutathione S-transferase parC [Populus euphratica]
5 Hb_000438_030 0.0451345982 - - -
6 Hb_005306_060 0.0471132509 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
7 Hb_151094_020 0.0741110258 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Prunus mume]
8 Hb_000163_020 0.086322596 - - -
9 Hb_010369_020 0.1114115661 - - hypothetical protein JCGZ_21088 [Jatropha curcas]
10 Hb_002766_070 0.1182877989 transcription factor TF Family: MYB hypothetical protein JCGZ_17894 [Jatropha curcas]
11 Hb_002759_200 0.1199946802 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 2 [Jatropha curcas]
12 Hb_001006_050 0.1229529606 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
13 Hb_000504_060 0.125417647 - - Cell division cycle protein cdt2, putative [Ricinus communis]
14 Hb_004116_090 0.1256225907 - - -
15 Hb_002025_280 0.1333320725 - - PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
16 Hb_000979_070 0.1342860164 - - PREDICTED: endoglucanase 8-like [Jatropha curcas]
17 Hb_103452_010 0.1390923404 - - hypothetical protein VITISV_027174 [Vitis vinifera]
18 Hb_185666_010 0.141178752 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
19 Hb_135673_010 0.1413761996 - - Germin-like protein subfamily 1 member 6 precursor [Populus trichocarpa]
20 Hb_000140_200 0.1421533675 - - PREDICTED: uncharacterized protein LOC105642928 [Jatropha curcas]

Gene co-expression network

sample Hb_046615_040 Hb_046615_040 Hb_003010_050 Hb_003010_050 Hb_046615_040--Hb_003010_050 Hb_010812_130 Hb_010812_130 Hb_046615_040--Hb_010812_130 Hb_147060_010 Hb_147060_010 Hb_046615_040--Hb_147060_010 Hb_000438_030 Hb_000438_030 Hb_046615_040--Hb_000438_030 Hb_005306_060 Hb_005306_060 Hb_046615_040--Hb_005306_060 Hb_151094_020 Hb_151094_020 Hb_046615_040--Hb_151094_020 Hb_003010_050--Hb_005306_060 Hb_003010_050--Hb_010812_130 Hb_003010_050--Hb_147060_010 Hb_003010_050--Hb_000438_030 Hb_000163_020 Hb_000163_020 Hb_003010_050--Hb_000163_020 Hb_010812_130--Hb_147060_010 Hb_010812_130--Hb_000438_030 Hb_010812_130--Hb_151094_020 Hb_010812_130--Hb_005306_060 Hb_147060_010--Hb_000438_030 Hb_147060_010--Hb_151094_020 Hb_147060_010--Hb_005306_060 Hb_000438_030--Hb_151094_020 Hb_000438_030--Hb_005306_060 Hb_005306_060--Hb_000163_020 Hb_010369_020 Hb_010369_020 Hb_005306_060--Hb_010369_020 Hb_001006_050 Hb_001006_050 Hb_151094_020--Hb_001006_050 Hb_135673_010 Hb_135673_010 Hb_151094_020--Hb_135673_010 Hb_103452_010 Hb_103452_010 Hb_151094_020--Hb_103452_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.02059 0.845498 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.434949 0

CAGE analysis