Hb_003010_050

Information

Type -
Description -
Location Contig3010: 37240-38964
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003010_050 0.0 - - -
2 Hb_046615_040 0.0217381571 - - unnamed protein product [Vitis vinifera]
3 Hb_005306_060 0.0278245393 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
4 Hb_010812_130 0.0375582693 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
5 Hb_147060_010 0.039787954 - - PREDICTED: probable glutathione S-transferase parC [Populus euphratica]
6 Hb_000438_030 0.0485329931 - - -
7 Hb_000163_020 0.0647345031 - - -
8 Hb_010369_020 0.0897783286 - - hypothetical protein JCGZ_21088 [Jatropha curcas]
9 Hb_151094_020 0.089824428 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Prunus mume]
10 Hb_002766_070 0.1134088005 transcription factor TF Family: MYB hypothetical protein JCGZ_17894 [Jatropha curcas]
11 Hb_002025_280 0.1282259808 - - PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
12 Hb_002759_200 0.1364561005 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 2 [Jatropha curcas]
13 Hb_000504_060 0.1367275218 - - Cell division cycle protein cdt2, putative [Ricinus communis]
14 Hb_000140_200 0.139874033 - - PREDICTED: uncharacterized protein LOC105642928 [Jatropha curcas]
15 Hb_001006_050 0.1407362404 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
16 Hb_000979_070 0.1428413482 - - PREDICTED: endoglucanase 8-like [Jatropha curcas]
17 Hb_185666_010 0.1455001109 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
18 Hb_000094_230 0.145808471 - - hypothetical protein JCGZ_04416 [Jatropha curcas]
19 Hb_085600_010 0.1467597464 - - PREDICTED: peroxidase 24-like [Jatropha curcas]
20 Hb_033312_100 0.1468873186 - - -

Gene co-expression network

sample Hb_003010_050 Hb_003010_050 Hb_046615_040 Hb_046615_040 Hb_003010_050--Hb_046615_040 Hb_005306_060 Hb_005306_060 Hb_003010_050--Hb_005306_060 Hb_010812_130 Hb_010812_130 Hb_003010_050--Hb_010812_130 Hb_147060_010 Hb_147060_010 Hb_003010_050--Hb_147060_010 Hb_000438_030 Hb_000438_030 Hb_003010_050--Hb_000438_030 Hb_000163_020 Hb_000163_020 Hb_003010_050--Hb_000163_020 Hb_046615_040--Hb_010812_130 Hb_046615_040--Hb_147060_010 Hb_046615_040--Hb_000438_030 Hb_046615_040--Hb_005306_060 Hb_151094_020 Hb_151094_020 Hb_046615_040--Hb_151094_020 Hb_005306_060--Hb_000163_020 Hb_005306_060--Hb_010812_130 Hb_005306_060--Hb_147060_010 Hb_010369_020 Hb_010369_020 Hb_005306_060--Hb_010369_020 Hb_010812_130--Hb_147060_010 Hb_010812_130--Hb_000438_030 Hb_010812_130--Hb_151094_020 Hb_147060_010--Hb_000438_030 Hb_147060_010--Hb_151094_020 Hb_000438_030--Hb_151094_020 Hb_000438_030--Hb_005306_060 Hb_000163_020--Hb_010369_020 Hb_000163_020--Hb_046615_040 Hb_074674_010 Hb_074674_010 Hb_000163_020--Hb_074674_010 Hb_000163_020--Hb_000438_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.162907 0.124907 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0608564 0

CAGE analysis