Hb_000163_020

Information

Type -
Description -
Location Contig163: 11560-12156
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14801: 11594-12131
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000163_020 0.0 - - -
2 Hb_010369_020 0.0267914365 - - hypothetical protein JCGZ_21088 [Jatropha curcas]
3 Hb_005306_060 0.0431131957 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
4 Hb_003010_050 0.0647345031 - - -
5 Hb_046615_040 0.086322596 - - unnamed protein product [Vitis vinifera]
6 Hb_074674_010 0.08843975 - - Cell division cycle protein cdt2, putative [Ricinus communis]
7 Hb_000438_030 0.0972311444 - - -
8 Hb_010812_130 0.0978854554 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
9 Hb_147060_010 0.0989843068 - - PREDICTED: probable glutathione S-transferase parC [Populus euphratica]
10 Hb_001384_030 0.1013992866 - - PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]
11 Hb_023386_070 0.1066207583 - - PREDICTED: probable pectinesterase 68 [Jatropha curcas]
12 Hb_061361_010 0.1150737577 - - kinase, putative [Ricinus communis]
13 Hb_002766_070 0.1161122906 transcription factor TF Family: MYB hypothetical protein JCGZ_17894 [Jatropha curcas]
14 Hb_000025_770 0.1198451069 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
15 Hb_033312_100 0.1245164595 - - -
16 Hb_002025_280 0.1273878763 - - PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
17 Hb_001205_280 0.1308504005 - - PREDICTED: probable polyol transporter 6 [Jatropha curcas]
18 Hb_000176_040 0.1314445986 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR3 isoform X2 [Jatropha curcas]
19 Hb_000422_040 0.1330655101 - - hypothetical protein CICLE_v10013147mg [Citrus clementina]
20 Hb_000621_100 0.1336107768 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000163_020 Hb_000163_020 Hb_010369_020 Hb_010369_020 Hb_000163_020--Hb_010369_020 Hb_005306_060 Hb_005306_060 Hb_000163_020--Hb_005306_060 Hb_003010_050 Hb_003010_050 Hb_000163_020--Hb_003010_050 Hb_046615_040 Hb_046615_040 Hb_000163_020--Hb_046615_040 Hb_074674_010 Hb_074674_010 Hb_000163_020--Hb_074674_010 Hb_000438_030 Hb_000438_030 Hb_000163_020--Hb_000438_030 Hb_010369_020--Hb_005306_060 Hb_010369_020--Hb_074674_010 Hb_001384_030 Hb_001384_030 Hb_010369_020--Hb_001384_030 Hb_061361_010 Hb_061361_010 Hb_010369_020--Hb_061361_010 Hb_023386_070 Hb_023386_070 Hb_010369_020--Hb_023386_070 Hb_005306_060--Hb_003010_050 Hb_005306_060--Hb_046615_040 Hb_010812_130 Hb_010812_130 Hb_005306_060--Hb_010812_130 Hb_147060_010 Hb_147060_010 Hb_005306_060--Hb_147060_010 Hb_003010_050--Hb_046615_040 Hb_003010_050--Hb_010812_130 Hb_003010_050--Hb_147060_010 Hb_003010_050--Hb_000438_030 Hb_046615_040--Hb_010812_130 Hb_046615_040--Hb_147060_010 Hb_046615_040--Hb_000438_030 Hb_151094_020 Hb_151094_020 Hb_046615_040--Hb_151094_020 Hb_074674_010--Hb_001384_030 Hb_074674_010--Hb_023386_070 Hb_001205_280 Hb_001205_280 Hb_074674_010--Hb_001205_280 Hb_046204_010 Hb_046204_010 Hb_074674_010--Hb_046204_010 Hb_074674_010--Hb_061361_010 Hb_000438_030--Hb_147060_010 Hb_000438_030--Hb_010812_130 Hb_000438_030--Hb_151094_020 Hb_000438_030--Hb_005306_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.395916 0.248975 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0966184 0

CAGE analysis