Hb_001898_170

Information

Type -
Description -
Location Contig1898: 148490-150921
Sequence    

Annotation

kegg
ID rcu:RCOM_0758660
description hypothetical protein
nr
ID XP_002526441.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SKC2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0758660 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18841: 150124-150267
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001898_170 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001258_070 0.0979551744 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003159_060 0.121953587 - - Uncharacterized protein TCM_001961 [Theobroma cacao]
4 Hb_000345_180 0.2005944576 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000365_150 0.242872258 - - GTP binding protein, putative [Ricinus communis]
6 Hb_001301_140 0.2530330852 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
7 Hb_183671_010 0.2793847976 - - serine carboxypeptidase, putative [Ricinus communis]
8 Hb_036026_010 0.2884193206 transcription factor TF Family: FAR1 FAR-RED IMPAIRED RESPONSE [Medicago truncatula]
9 Hb_101376_010 0.2893138889 - - conserved hypothetical protein [Ricinus communis]
10 Hb_096473_010 0.2989206553 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
11 Hb_019181_020 0.3012286517 - - PREDICTED: uncharacterized protein LOC105763068 [Gossypium raimondii]
12 Hb_007943_170 0.3061850301 - - PREDICTED: rho guanine nucleotide exchange factor 8-like [Jatropha curcas]
13 Hb_005601_030 0.3079462533 - - organic anion transporter, putative [Ricinus communis]
14 Hb_001391_050 0.3089917706 - - PREDICTED: probable carboxylesterase 18 [Jatropha curcas]
15 Hb_115832_010 0.3126352374 - - transcription factor, putative [Ricinus communis]
16 Hb_120820_010 0.3272362508 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
17 Hb_007113_030 0.3278350083 - - -
18 Hb_009535_010 0.3293411534 - - PREDICTED: DNA replication licensing factor MCM4 [Jatropha curcas]
19 Hb_001269_120 0.3296608347 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF003-like [Jatropha curcas]
20 Hb_001514_170 0.3308116698 - - PREDICTED: putative cyclin-A3-1 [Jatropha curcas]

Gene co-expression network

sample Hb_001898_170 Hb_001898_170 Hb_001258_070 Hb_001258_070 Hb_001898_170--Hb_001258_070 Hb_003159_060 Hb_003159_060 Hb_001898_170--Hb_003159_060 Hb_000345_180 Hb_000345_180 Hb_001898_170--Hb_000345_180 Hb_000365_150 Hb_000365_150 Hb_001898_170--Hb_000365_150 Hb_001301_140 Hb_001301_140 Hb_001898_170--Hb_001301_140 Hb_183671_010 Hb_183671_010 Hb_001898_170--Hb_183671_010 Hb_001258_070--Hb_003159_060 Hb_001258_070--Hb_000365_150 Hb_101376_010 Hb_101376_010 Hb_001258_070--Hb_101376_010 Hb_001258_070--Hb_000345_180 Hb_007113_030 Hb_007113_030 Hb_001258_070--Hb_007113_030 Hb_003159_060--Hb_000345_180 Hb_003159_060--Hb_001301_140 Hb_003159_060--Hb_000365_150 Hb_001514_170 Hb_001514_170 Hb_003159_060--Hb_001514_170 Hb_000345_180--Hb_001301_140 Hb_000345_180--Hb_000365_150 Hb_007943_170 Hb_007943_170 Hb_000345_180--Hb_007943_170 Hb_000345_180--Hb_001514_170 Hb_000365_150--Hb_007943_170 Hb_000365_150--Hb_001301_140 Hb_000438_030 Hb_000438_030 Hb_000365_150--Hb_000438_030 Hb_147060_010 Hb_147060_010 Hb_000365_150--Hb_147060_010 Hb_001301_140--Hb_007943_170 Hb_001488_080 Hb_001488_080 Hb_001301_140--Hb_001488_080 Hb_007558_110 Hb_007558_110 Hb_001301_140--Hb_007558_110 Hb_115832_010 Hb_115832_010 Hb_183671_010--Hb_115832_010 Hb_006663_110 Hb_006663_110 Hb_183671_010--Hb_006663_110 Hb_005601_030 Hb_005601_030 Hb_183671_010--Hb_005601_030 Hb_019181_020 Hb_019181_020 Hb_183671_010--Hb_019181_020 Hb_001391_050 Hb_001391_050 Hb_183671_010--Hb_001391_050 Hb_120820_010 Hb_120820_010 Hb_183671_010--Hb_120820_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0288908 0 0.0356098 0.0367715 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0167508 0

CAGE analysis