Hb_115832_010

Information

Type -
Description -
Location Contig115832: 1727-2563
Sequence    

Annotation

kegg
ID rcu:RCOM_0351480
description transcription factor, putative
nr
ID XP_002532630.1
description transcription factor, putative [Ricinus communis]
swissprot
ID O23659
description B3 domain-containing protein At2g33720 OS=Arabidopsis thaliana GN=At2g33720 PE=2 SV=1
trembl
ID B9T311
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0351480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_115832_010 0.0 - - transcription factor, putative [Ricinus communis]
2 Hb_183671_010 0.1373806705 - - serine carboxypeptidase, putative [Ricinus communis]
3 Hb_005601_030 0.1726267362 - - organic anion transporter, putative [Ricinus communis]
4 Hb_006663_110 0.2147967658 - - PREDICTED: U-box domain-containing protein 34-like [Camelina sativa]
5 Hb_000345_180 0.2159845785 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001391_050 0.2239973568 - - PREDICTED: probable carboxylesterase 18 [Jatropha curcas]
7 Hb_007617_040 0.2271100126 - - PREDICTED: syntaxin-112-like [Jatropha curcas]
8 Hb_019181_020 0.2280972646 - - PREDICTED: uncharacterized protein LOC105763068 [Gossypium raimondii]
9 Hb_000105_110 0.2297756799 - - hypothetical protein, partial [Fervidibacteria bacterium SCGC AAA471-D06]
10 Hb_000362_140 0.2333876264 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 61-like [Jatropha curcas]
11 Hb_001301_140 0.2396779756 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
12 Hb_007413_020 0.2457309675 - - conserved hypothetical protein [Ricinus communis]
13 Hb_012016_050 0.2519199587 - - hypothetical protein JCGZ_09036 [Jatropha curcas]
14 Hb_003159_060 0.2545397586 - - Uncharacterized protein TCM_001961 [Theobroma cacao]
15 Hb_000723_070 0.254641998 - - PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_173638_010 0.260963391 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
17 Hb_120820_010 0.2610757703 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
18 Hb_047560_010 0.2648076102 - - PREDICTED: GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]
19 Hb_001688_090 0.2658604475 - - alcohol dehydrogenase 7 [Vitis vinifera]
20 Hb_002078_070 0.267399313 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_115832_010 Hb_115832_010 Hb_183671_010 Hb_183671_010 Hb_115832_010--Hb_183671_010 Hb_005601_030 Hb_005601_030 Hb_115832_010--Hb_005601_030 Hb_006663_110 Hb_006663_110 Hb_115832_010--Hb_006663_110 Hb_000345_180 Hb_000345_180 Hb_115832_010--Hb_000345_180 Hb_001391_050 Hb_001391_050 Hb_115832_010--Hb_001391_050 Hb_007617_040 Hb_007617_040 Hb_115832_010--Hb_007617_040 Hb_183671_010--Hb_006663_110 Hb_183671_010--Hb_005601_030 Hb_019181_020 Hb_019181_020 Hb_183671_010--Hb_019181_020 Hb_183671_010--Hb_001391_050 Hb_120820_010 Hb_120820_010 Hb_183671_010--Hb_120820_010 Hb_005601_030--Hb_001391_050 Hb_005601_030--Hb_019181_020 Hb_047560_010 Hb_047560_010 Hb_005601_030--Hb_047560_010 Hb_000105_110 Hb_000105_110 Hb_005601_030--Hb_000105_110 Hb_001369_680 Hb_001369_680 Hb_006663_110--Hb_001369_680 Hb_001688_090 Hb_001688_090 Hb_006663_110--Hb_001688_090 Hb_006663_110--Hb_001391_050 Hb_006663_110--Hb_005601_030 Hb_003159_060 Hb_003159_060 Hb_000345_180--Hb_003159_060 Hb_001301_140 Hb_001301_140 Hb_000345_180--Hb_001301_140 Hb_000365_150 Hb_000365_150 Hb_000345_180--Hb_000365_150 Hb_001898_170 Hb_001898_170 Hb_000345_180--Hb_001898_170 Hb_007943_170 Hb_007943_170 Hb_000345_180--Hb_007943_170 Hb_001514_170 Hb_001514_170 Hb_000345_180--Hb_001514_170 Hb_001391_050--Hb_047560_010 Hb_000107_260 Hb_000107_260 Hb_001391_050--Hb_000107_260 Hb_000375_140 Hb_000375_140 Hb_001391_050--Hb_000375_140 Hb_012016_050 Hb_012016_050 Hb_007617_040--Hb_012016_050 Hb_000556_130 Hb_000556_130 Hb_007617_040--Hb_000556_130 Hb_128392_010 Hb_128392_010 Hb_007617_040--Hb_128392_010 Hb_021576_050 Hb_021576_050 Hb_007617_040--Hb_021576_050 Hb_003813_110 Hb_003813_110 Hb_007617_040--Hb_003813_110 Hb_001247_060 Hb_001247_060 Hb_007617_040--Hb_001247_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0276641 0 0.0832232 0.0918682 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis