Hb_019181_020

Information

Type -
Description -
Location Contig19181: 20052-26952
Sequence    

Annotation

kegg
ID vvi:104881189
description uncharacterized LOC104881189
nr
ID XP_012436580.1
description PREDICTED: uncharacterized protein LOC105763068 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID Q5CAI5
description OSJNBa0032N05.13 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0032N05.13 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019181_020 0.0 - - PREDICTED: uncharacterized protein LOC105763068 [Gossypium raimondii]
2 Hb_120820_010 0.0582613111 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
3 Hb_183671_010 0.1876345786 - - serine carboxypeptidase, putative [Ricinus communis]
4 Hb_005601_030 0.2025834483 - - organic anion transporter, putative [Ricinus communis]
5 Hb_115832_010 0.2280972646 - - transcription factor, putative [Ricinus communis]
6 Hb_010174_050 0.2429888874 - - PREDICTED: probable pectate lyase 5 [Populus euphratica]
7 Hb_001301_140 0.2848381668 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
8 Hb_000362_140 0.2915392112 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 61-like [Jatropha curcas]
9 Hb_007413_020 0.2989376976 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001391_050 0.2999594335 - - PREDICTED: probable carboxylesterase 18 [Jatropha curcas]
11 Hb_001898_170 0.3012286517 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000723_070 0.3018869213 - - PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_047560_010 0.3103380503 - - PREDICTED: GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]
14 Hb_000345_180 0.3130180604 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001488_080 0.313407533 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
16 Hb_003159_060 0.3222359574 - - Uncharacterized protein TCM_001961 [Theobroma cacao]
17 Hb_001762_050 0.3242204537 - - PREDICTED: xylem cysteine proteinase 1 [Jatropha curcas]
18 Hb_006663_110 0.3325932282 - - PREDICTED: U-box domain-containing protein 34-like [Camelina sativa]
19 Hb_002851_040 0.3429635537 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 5 [Jatropha curcas]
20 Hb_003861_030 0.3433053659 - - hypothetical protein JCGZ_16321 [Jatropha curcas]

Gene co-expression network

sample Hb_019181_020 Hb_019181_020 Hb_120820_010 Hb_120820_010 Hb_019181_020--Hb_120820_010 Hb_183671_010 Hb_183671_010 Hb_019181_020--Hb_183671_010 Hb_005601_030 Hb_005601_030 Hb_019181_020--Hb_005601_030 Hb_115832_010 Hb_115832_010 Hb_019181_020--Hb_115832_010 Hb_010174_050 Hb_010174_050 Hb_019181_020--Hb_010174_050 Hb_001301_140 Hb_001301_140 Hb_019181_020--Hb_001301_140 Hb_120820_010--Hb_005601_030 Hb_120820_010--Hb_183671_010 Hb_120820_010--Hb_115832_010 Hb_120820_010--Hb_010174_050 Hb_000362_140 Hb_000362_140 Hb_120820_010--Hb_000362_140 Hb_183671_010--Hb_115832_010 Hb_006663_110 Hb_006663_110 Hb_183671_010--Hb_006663_110 Hb_183671_010--Hb_005601_030 Hb_001391_050 Hb_001391_050 Hb_183671_010--Hb_001391_050 Hb_005601_030--Hb_115832_010 Hb_005601_030--Hb_001391_050 Hb_047560_010 Hb_047560_010 Hb_005601_030--Hb_047560_010 Hb_000105_110 Hb_000105_110 Hb_005601_030--Hb_000105_110 Hb_115832_010--Hb_006663_110 Hb_000345_180 Hb_000345_180 Hb_115832_010--Hb_000345_180 Hb_115832_010--Hb_001391_050 Hb_007617_040 Hb_007617_040 Hb_115832_010--Hb_007617_040 Hb_001007_080 Hb_001007_080 Hb_010174_050--Hb_001007_080 Hb_043295_010 Hb_043295_010 Hb_010174_050--Hb_043295_010 Hb_007245_010 Hb_007245_010 Hb_010174_050--Hb_007245_010 Hb_000964_160 Hb_000964_160 Hb_010174_050--Hb_000964_160 Hb_001301_140--Hb_000345_180 Hb_007943_170 Hb_007943_170 Hb_001301_140--Hb_007943_170 Hb_001488_080 Hb_001488_080 Hb_001301_140--Hb_001488_080 Hb_000365_150 Hb_000365_150 Hb_001301_140--Hb_000365_150 Hb_003159_060 Hb_003159_060 Hb_001301_140--Hb_003159_060 Hb_007558_110 Hb_007558_110 Hb_001301_140--Hb_007558_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0165551 0 0.025382 0.0124542 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis