Hb_000964_160

Information

Type -
Description -
Location Contig964: 148239-148697
Sequence    

Annotation

kegg
ID cit:102617979
description hypothetical protein
nr
ID XP_006482879.1
description PREDICTED: uncharacterized protein LOC102617979 isoform X2 [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067DFN9
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038447mg PE=4 SV=1
Gene Ontology
ID GO:0044464
description cellulose synthase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63861: 149130-156787 , PASA_asmbl_63862: 149167-156074
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000964_160 0.0 - - PREDICTED: uncharacterized protein LOC102617979 isoform X2 [Citrus sinensis]
2 Hb_007245_010 0.0034335825 - - PREDICTED: uncharacterized protein LOC104783698 [Camelina sativa]
3 Hb_043295_010 0.0035346496 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
4 Hb_002545_030 0.0414161738 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_000441_010 0.0463442336 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
6 Hb_014720_060 0.0470685848 - - hypothetical protein JCGZ_11469 [Jatropha curcas]
7 Hb_131101_010 0.062364884 - - -
8 Hb_001761_110 0.0667372338 - - Contains similarity to Cf-2.2 gene gb
9 Hb_174245_020 0.1288009694 - - -
10 Hb_001959_230 0.1492473947 - - PREDICTED: uncharacterized protein LOC105638436 [Jatropha curcas]
11 Hb_113444_010 0.1583925577 - - -
12 Hb_000274_030 0.1722020191 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
13 Hb_000429_060 0.1763327963 - - conserved hypothetical protein [Ricinus communis]
14 Hb_069877_010 0.193500105 - - chaperone protein DNAj, putative [Ricinus communis]
15 Hb_135811_030 0.1980827111 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
16 Hb_003266_120 0.2045379015 - - PREDICTED: uncharacterized protein LOC105650228 [Jatropha curcas]
17 Hb_021409_130 0.2732558432 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like isoform 1 [Glycine max]
18 Hb_001248_040 0.2769890978 - - -
19 Hb_086922_010 0.2786834322 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
20 Hb_010174_050 0.2816873176 - - PREDICTED: probable pectate lyase 5 [Populus euphratica]

Gene co-expression network

sample Hb_000964_160 Hb_000964_160 Hb_007245_010 Hb_007245_010 Hb_000964_160--Hb_007245_010 Hb_043295_010 Hb_043295_010 Hb_000964_160--Hb_043295_010 Hb_002545_030 Hb_002545_030 Hb_000964_160--Hb_002545_030 Hb_000441_010 Hb_000441_010 Hb_000964_160--Hb_000441_010 Hb_014720_060 Hb_014720_060 Hb_000964_160--Hb_014720_060 Hb_131101_010 Hb_131101_010 Hb_000964_160--Hb_131101_010 Hb_007245_010--Hb_043295_010 Hb_007245_010--Hb_002545_030 Hb_007245_010--Hb_000441_010 Hb_007245_010--Hb_014720_060 Hb_007245_010--Hb_131101_010 Hb_043295_010--Hb_002545_030 Hb_043295_010--Hb_000441_010 Hb_043295_010--Hb_014720_060 Hb_043295_010--Hb_131101_010 Hb_002545_030--Hb_000441_010 Hb_002545_030--Hb_014720_060 Hb_002545_030--Hb_131101_010 Hb_001761_110 Hb_001761_110 Hb_002545_030--Hb_001761_110 Hb_000441_010--Hb_014720_060 Hb_000441_010--Hb_131101_010 Hb_000441_010--Hb_001761_110 Hb_014720_060--Hb_131101_010 Hb_014720_060--Hb_001761_110 Hb_131101_010--Hb_001761_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.253685 0 0.154476 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis