Hb_001761_110

Information

Type -
Description -
Location Contig1761: 142023-142933
Sequence    

Annotation

kegg
ID atr:s00005p00184180
description AMTR_s00005p00184180; hypothetical protein
nr
ID AAC17069.1
description Contains similarity to Cf-2.2 gene gb
swissprot
ID -
description -
trembl
ID A0A0A9DAA4
description Ltk2 OS=Arundo donax PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein strubbelig-receptor family 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001761_110 0.0 - - Contains similarity to Cf-2.2 gene gb
2 Hb_131101_010 0.0043789327 - - -
3 Hb_014720_060 0.0196911497 - - hypothetical protein JCGZ_11469 [Jatropha curcas]
4 Hb_000441_010 0.0204159781 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
5 Hb_002545_030 0.0253466156 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_174245_020 0.0622523747 - - -
7 Hb_000964_160 0.0667372338 - - PREDICTED: uncharacterized protein LOC102617979 isoform X2 [Citrus sinensis]
8 Hb_007245_010 0.0701648053 - - PREDICTED: uncharacterized protein LOC104783698 [Camelina sativa]
9 Hb_043295_010 0.0702656862 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
10 Hb_001959_230 0.082799358 - - PREDICTED: uncharacterized protein LOC105638436 [Jatropha curcas]
11 Hb_113444_010 0.0919956395 - - -
12 Hb_000429_060 0.1100472411 - - conserved hypothetical protein [Ricinus communis]
13 Hb_069877_010 0.1273349774 - - chaperone protein DNAj, putative [Ricinus communis]
14 Hb_135811_030 0.1319520456 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
15 Hb_086922_010 0.2133250255 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
16 Hb_007632_150 0.2302205024 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000274_030 0.2377729024 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
18 Hb_003266_120 0.2696527393 - - PREDICTED: uncharacterized protein LOC105650228 [Jatropha curcas]
19 Hb_010174_050 0.3006784843 - - PREDICTED: probable pectate lyase 5 [Populus euphratica]
20 Hb_021409_130 0.3121761316 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like isoform 1 [Glycine max]

Gene co-expression network

sample Hb_001761_110 Hb_001761_110 Hb_131101_010 Hb_131101_010 Hb_001761_110--Hb_131101_010 Hb_014720_060 Hb_014720_060 Hb_001761_110--Hb_014720_060 Hb_000441_010 Hb_000441_010 Hb_001761_110--Hb_000441_010 Hb_002545_030 Hb_002545_030 Hb_001761_110--Hb_002545_030 Hb_174245_020 Hb_174245_020 Hb_001761_110--Hb_174245_020 Hb_000964_160 Hb_000964_160 Hb_001761_110--Hb_000964_160 Hb_131101_010--Hb_014720_060 Hb_131101_010--Hb_000441_010 Hb_131101_010--Hb_002545_030 Hb_131101_010--Hb_000964_160 Hb_007245_010 Hb_007245_010 Hb_131101_010--Hb_007245_010 Hb_014720_060--Hb_000441_010 Hb_014720_060--Hb_002545_030 Hb_014720_060--Hb_000964_160 Hb_014720_060--Hb_007245_010 Hb_000441_010--Hb_002545_030 Hb_000441_010--Hb_000964_160 Hb_000441_010--Hb_007245_010 Hb_002545_030--Hb_000964_160 Hb_002545_030--Hb_007245_010 Hb_001959_230 Hb_001959_230 Hb_174245_020--Hb_001959_230 Hb_113444_010 Hb_113444_010 Hb_174245_020--Hb_113444_010 Hb_000429_060 Hb_000429_060 Hb_174245_020--Hb_000429_060 Hb_069877_010 Hb_069877_010 Hb_174245_020--Hb_069877_010 Hb_174245_020--Hb_131101_010 Hb_000964_160--Hb_007245_010 Hb_043295_010 Hb_043295_010 Hb_000964_160--Hb_043295_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.485347 0 0.406697 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis