Hb_001959_230

Information

Type -
Description -
Location Contig1959: 209551-210272
Sequence    

Annotation

kegg
ID rcu:RCOM_1216830
description hypothetical protein
nr
ID XP_012077630.1
description PREDICTED: uncharacterized protein LOC105638436 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KEC4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12887 PE=4 SV=1
Gene Ontology
ID GO:0003824
description adenine nucleotide alpha hydrolases-like superfamily

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19643: 211153-213616
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001959_230 0.0 - - PREDICTED: uncharacterized protein LOC105638436 [Jatropha curcas]
2 Hb_113444_010 0.0092207445 - - -
3 Hb_174245_020 0.0205838065 - - -
4 Hb_000429_060 0.0273349143 - - conserved hypothetical protein [Ricinus communis]
5 Hb_069877_010 0.0447009361 - - chaperone protein DNAj, putative [Ricinus communis]
6 Hb_135811_030 0.0493420037 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
7 Hb_001761_110 0.082799358 - - Contains similarity to Cf-2.2 gene gb
8 Hb_131101_010 0.0871673202 - - -
9 Hb_014720_060 0.1024324436 - - hypothetical protein JCGZ_11469 [Jatropha curcas]
10 Hb_000441_010 0.1031547048 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
11 Hb_002545_030 0.1080670633 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_086922_010 0.1313645272 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
13 Hb_007632_150 0.1484524942 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000964_160 0.1492473947 - - PREDICTED: uncharacterized protein LOC102617979 isoform X2 [Citrus sinensis]
15 Hb_007245_010 0.1526529149 - - PREDICTED: uncharacterized protein LOC104783698 [Camelina sativa]
16 Hb_043295_010 0.1527531358 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
17 Hb_001049_080 0.2568225557 - - -
18 Hb_003897_020 0.3128295394 transcription factor TF Family: Orphans transcription factor, putative [Ricinus communis]
19 Hb_000274_030 0.3182017574 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
20 Hb_120820_010 0.3225751333 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]

Gene co-expression network

sample Hb_001959_230 Hb_001959_230 Hb_113444_010 Hb_113444_010 Hb_001959_230--Hb_113444_010 Hb_174245_020 Hb_174245_020 Hb_001959_230--Hb_174245_020 Hb_000429_060 Hb_000429_060 Hb_001959_230--Hb_000429_060 Hb_069877_010 Hb_069877_010 Hb_001959_230--Hb_069877_010 Hb_135811_030 Hb_135811_030 Hb_001959_230--Hb_135811_030 Hb_001761_110 Hb_001761_110 Hb_001959_230--Hb_001761_110 Hb_113444_010--Hb_000429_060 Hb_113444_010--Hb_174245_020 Hb_113444_010--Hb_069877_010 Hb_113444_010--Hb_135811_030 Hb_113444_010--Hb_001761_110 Hb_174245_020--Hb_000429_060 Hb_174245_020--Hb_001761_110 Hb_174245_020--Hb_069877_010 Hb_131101_010 Hb_131101_010 Hb_174245_020--Hb_131101_010 Hb_000429_060--Hb_069877_010 Hb_000429_060--Hb_135811_030 Hb_086922_010 Hb_086922_010 Hb_000429_060--Hb_086922_010 Hb_069877_010--Hb_135811_030 Hb_069877_010--Hb_086922_010 Hb_135811_030--Hb_174245_020 Hb_135811_030--Hb_086922_010 Hb_001761_110--Hb_131101_010 Hb_014720_060 Hb_014720_060 Hb_001761_110--Hb_014720_060 Hb_000441_010 Hb_000441_010 Hb_001761_110--Hb_000441_010 Hb_002545_030 Hb_002545_030 Hb_001761_110--Hb_002545_030 Hb_000964_160 Hb_000964_160 Hb_001761_110--Hb_000964_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0568721 0 0.0704506 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis