Hb_135811_030

Information

Type -
Description -
Location Contig135811: 25002-29558
Sequence    

Annotation

kegg
ID pop:POPTR_0011s01952g
description hypothetical protein
nr
ID XP_006377206.1
description hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FUS7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01952g PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein gis2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_135811_030 0.0 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
2 Hb_069877_010 0.0046448552 - - chaperone protein DNAj, putative [Ricinus communis]
3 Hb_000429_060 0.0220179671 - - conserved hypothetical protein [Ricinus communis]
4 Hb_113444_010 0.040127887 - - -
5 Hb_001959_230 0.0493420037 - - PREDICTED: uncharacterized protein LOC105638436 [Jatropha curcas]
6 Hb_174245_020 0.0699003705 - - -
7 Hb_086922_010 0.0822311208 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
8 Hb_007632_150 0.0993992298 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001761_110 0.1319520456 - - Contains similarity to Cf-2.2 gene gb
10 Hb_131101_010 0.1363036657 - - -
11 Hb_014720_060 0.1515067092 - - hypothetical protein JCGZ_11469 [Jatropha curcas]
12 Hb_000441_010 0.1522258414 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
13 Hb_002545_030 0.1571164588 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_000964_160 0.1980827111 - - PREDICTED: uncharacterized protein LOC102617979 isoform X2 [Citrus sinensis]
15 Hb_007245_010 0.2014679521 - - PREDICTED: uncharacterized protein LOC104783698 [Camelina sativa]
16 Hb_043295_010 0.2015675701 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
17 Hb_001049_080 0.2086376112 - - -
18 Hb_000392_200 0.2781800723 - - PREDICTED: cytochrome P450 98A2-like isoform X2 [Phoenix dactylifera]
19 Hb_003897_020 0.3005257283 transcription factor TF Family: Orphans transcription factor, putative [Ricinus communis]
20 Hb_120820_010 0.314729517 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]

Gene co-expression network

sample Hb_135811_030 Hb_135811_030 Hb_069877_010 Hb_069877_010 Hb_135811_030--Hb_069877_010 Hb_000429_060 Hb_000429_060 Hb_135811_030--Hb_000429_060 Hb_113444_010 Hb_113444_010 Hb_135811_030--Hb_113444_010 Hb_001959_230 Hb_001959_230 Hb_135811_030--Hb_001959_230 Hb_174245_020 Hb_174245_020 Hb_135811_030--Hb_174245_020 Hb_086922_010 Hb_086922_010 Hb_135811_030--Hb_086922_010 Hb_069877_010--Hb_000429_060 Hb_069877_010--Hb_113444_010 Hb_069877_010--Hb_001959_230 Hb_069877_010--Hb_174245_020 Hb_069877_010--Hb_086922_010 Hb_000429_060--Hb_113444_010 Hb_000429_060--Hb_001959_230 Hb_000429_060--Hb_174245_020 Hb_000429_060--Hb_086922_010 Hb_113444_010--Hb_001959_230 Hb_113444_010--Hb_174245_020 Hb_001761_110 Hb_001761_110 Hb_113444_010--Hb_001761_110 Hb_001959_230--Hb_174245_020 Hb_001959_230--Hb_001761_110 Hb_174245_020--Hb_001761_110 Hb_131101_010 Hb_131101_010 Hb_174245_020--Hb_131101_010 Hb_007632_150 Hb_007632_150 Hb_086922_010--Hb_007632_150 Hb_086922_010--Hb_113444_010 Hb_001049_080 Hb_001049_080 Hb_086922_010--Hb_001049_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0810476 0 0.127095 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis