Hb_001049_080

Information

Type -
Description -
Location Contig1049: 172527-174208
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001049_080 0.0 - - -
2 Hb_000392_200 0.0724117324 - - PREDICTED: cytochrome P450 98A2-like isoform X2 [Phoenix dactylifera]
3 Hb_007632_150 0.1104321275 - - conserved hypothetical protein [Ricinus communis]
4 Hb_086922_010 0.1275214964 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
5 Hb_023226_050 0.158803326 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
6 Hb_135811_030 0.2086376112 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
7 Hb_069877_010 0.2131876368 - - chaperone protein DNAj, putative [Ricinus communis]
8 Hb_000429_060 0.2301793821 - - conserved hypothetical protein [Ricinus communis]
9 Hb_113444_010 0.2478487404 - - -
10 Hb_162304_010 0.2518346965 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001959_230 0.2568225557 - - PREDICTED: uncharacterized protein LOC105638436 [Jatropha curcas]
12 Hb_174245_020 0.2768071023 - - -
13 Hb_002450_160 0.2907491079 - - PREDICTED: protein 108 [Jatropha curcas]
14 Hb_002157_200 0.297881887 - - hypothetical protein VITISV_040170 [Vitis vinifera]
15 Hb_000006_020 0.3020941477 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000015_240 0.3020941477 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000016_090 0.3020941477 - - -
18 Hb_000016_240 0.3020941477 transcription factor TF Family: LOB hypothetical protein POPTR_0012s13910g [Populus trichocarpa]
19 Hb_000028_020 0.3020941477 - - -
20 Hb_000028_300 0.3020941477 - - hypothetical protein 0_13835_01, partial [Pinus radiata]

Gene co-expression network

sample Hb_001049_080 Hb_001049_080 Hb_000392_200 Hb_000392_200 Hb_001049_080--Hb_000392_200 Hb_007632_150 Hb_007632_150 Hb_001049_080--Hb_007632_150 Hb_086922_010 Hb_086922_010 Hb_001049_080--Hb_086922_010 Hb_023226_050 Hb_023226_050 Hb_001049_080--Hb_023226_050 Hb_135811_030 Hb_135811_030 Hb_001049_080--Hb_135811_030 Hb_069877_010 Hb_069877_010 Hb_001049_080--Hb_069877_010 Hb_000392_200--Hb_023226_050 Hb_000392_200--Hb_007632_150 Hb_000392_200--Hb_086922_010 Hb_162304_010 Hb_162304_010 Hb_000392_200--Hb_162304_010 Hb_000006_020 Hb_000006_020 Hb_000392_200--Hb_000006_020 Hb_007632_150--Hb_086922_010 Hb_007632_150--Hb_135811_030 Hb_007632_150--Hb_069877_010 Hb_000429_060 Hb_000429_060 Hb_007632_150--Hb_000429_060 Hb_113444_010 Hb_113444_010 Hb_007632_150--Hb_113444_010 Hb_086922_010--Hb_135811_030 Hb_086922_010--Hb_069877_010 Hb_086922_010--Hb_000429_060 Hb_086922_010--Hb_113444_010 Hb_000375_270 Hb_000375_270 Hb_023226_050--Hb_000375_270 Hb_023226_050--Hb_000006_020 Hb_000015_240 Hb_000015_240 Hb_023226_050--Hb_000015_240 Hb_000016_090 Hb_000016_090 Hb_023226_050--Hb_000016_090 Hb_135811_030--Hb_069877_010 Hb_135811_030--Hb_000429_060 Hb_135811_030--Hb_113444_010 Hb_001959_230 Hb_001959_230 Hb_135811_030--Hb_001959_230 Hb_174245_020 Hb_174245_020 Hb_135811_030--Hb_174245_020 Hb_069877_010--Hb_000429_060 Hb_069877_010--Hb_113444_010 Hb_069877_010--Hb_001959_230 Hb_069877_010--Hb_174245_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0869099 0 0.421407 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis