Hb_069877_010

Information

Type -
Description -
Location Contig69877: 1323-1850
Sequence    

Annotation

kegg
ID rcu:RCOM_0443440
description chaperone protein DNAj, putative
nr
ID XP_002534155.1
description chaperone protein DNAj, putative [Ricinus communis]
swissprot
ID Q9SDN0
description Chaperone protein dnaJ 20, chloroplastic OS=Arabidopsis thaliana GN=ATJ20 PE=1 SV=2
trembl
ID B9T7D6
description Chaperone protein DNAj, putative OS=Ricinus communis GN=RCOM_0443440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_069877_010 0.0 - - chaperone protein DNAj, putative [Ricinus communis]
2 Hb_135811_030 0.0046448552 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
3 Hb_000429_060 0.0173737794 - - conserved hypothetical protein [Ricinus communis]
4 Hb_113444_010 0.0354854899 - - -
5 Hb_001959_230 0.0447009361 - - PREDICTED: uncharacterized protein LOC105638436 [Jatropha curcas]
6 Hb_174245_020 0.0652632644 - - -
7 Hb_086922_010 0.0868625188 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
8 Hb_007632_150 0.1040243123 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001761_110 0.1273349774 - - Contains similarity to Cf-2.2 gene gb
10 Hb_131101_010 0.1316884499 - - -
11 Hb_014720_060 0.1468984225 - - hypothetical protein JCGZ_11469 [Jatropha curcas]
12 Hb_000441_010 0.1476179001 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
13 Hb_002545_030 0.1525109086 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_000964_160 0.193500105 - - PREDICTED: uncharacterized protein LOC102617979 isoform X2 [Citrus sinensis]
15 Hb_007245_010 0.1968874772 - - PREDICTED: uncharacterized protein LOC104783698 [Camelina sativa]
16 Hb_043295_010 0.1969871585 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
17 Hb_001049_080 0.2131876368 - - -
18 Hb_000392_200 0.2826430489 - - PREDICTED: cytochrome P450 98A2-like isoform X2 [Phoenix dactylifera]
19 Hb_003897_020 0.301395102 transcription factor TF Family: Orphans transcription factor, putative [Ricinus communis]
20 Hb_120820_010 0.3151817732 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]

Gene co-expression network

sample Hb_069877_010 Hb_069877_010 Hb_135811_030 Hb_135811_030 Hb_069877_010--Hb_135811_030 Hb_000429_060 Hb_000429_060 Hb_069877_010--Hb_000429_060 Hb_113444_010 Hb_113444_010 Hb_069877_010--Hb_113444_010 Hb_001959_230 Hb_001959_230 Hb_069877_010--Hb_001959_230 Hb_174245_020 Hb_174245_020 Hb_069877_010--Hb_174245_020 Hb_086922_010 Hb_086922_010 Hb_069877_010--Hb_086922_010 Hb_135811_030--Hb_000429_060 Hb_135811_030--Hb_113444_010 Hb_135811_030--Hb_001959_230 Hb_135811_030--Hb_174245_020 Hb_135811_030--Hb_086922_010 Hb_000429_060--Hb_113444_010 Hb_000429_060--Hb_001959_230 Hb_000429_060--Hb_174245_020 Hb_000429_060--Hb_086922_010 Hb_113444_010--Hb_001959_230 Hb_113444_010--Hb_174245_020 Hb_001761_110 Hb_001761_110 Hb_113444_010--Hb_001761_110 Hb_001959_230--Hb_174245_020 Hb_001959_230--Hb_001761_110 Hb_174245_020--Hb_001761_110 Hb_131101_010 Hb_131101_010 Hb_174245_020--Hb_131101_010 Hb_007632_150 Hb_007632_150 Hb_086922_010--Hb_007632_150 Hb_086922_010--Hb_113444_010 Hb_001049_080 Hb_001049_080 Hb_086922_010--Hb_001049_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0526383 0 0.0807161 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis