Hb_002545_030

Information

Type -
Description -
Location Contig2545: 6724-8753
Sequence    

Annotation

kegg
ID tcc:TCM_009998
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044383.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P03360
description Pol polyprotein (Fragment) OS=Avian reticuloendotheliosis virus GN=pol PE=3 SV=1
trembl
ID A0A061E5E3
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009998 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002545_030 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_000441_010 0.0049315495 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
3 Hb_014720_060 0.0056564746 - - hypothetical protein JCGZ_11469 [Jatropha curcas]
4 Hb_131101_010 0.0209685097 - - -
5 Hb_001761_110 0.0253466156 - - Contains similarity to Cf-2.2 gene gb
6 Hb_000964_160 0.0414161738 - - PREDICTED: uncharacterized protein LOC102617979 isoform X2 [Citrus sinensis]
7 Hb_007245_010 0.0448473337 - - PREDICTED: uncharacterized protein LOC104783698 [Camelina sativa]
8 Hb_043295_010 0.0449483237 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
9 Hb_174245_020 0.0875507697 - - -
10 Hb_001959_230 0.1080670633 - - PREDICTED: uncharacterized protein LOC105638436 [Jatropha curcas]
11 Hb_113444_010 0.1172472376 - - -
12 Hb_000429_060 0.1352629334 - - conserved hypothetical protein [Ricinus communis]
13 Hb_069877_010 0.1525109086 - - chaperone protein DNAj, putative [Ricinus communis]
14 Hb_135811_030 0.1571164588 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
15 Hb_000274_030 0.2129534207 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
16 Hb_086922_010 0.2382216125 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
17 Hb_003266_120 0.2450143738 - - PREDICTED: uncharacterized protein LOC105650228 [Jatropha curcas]
18 Hb_007632_150 0.2550452448 - - conserved hypothetical protein [Ricinus communis]
19 Hb_010174_050 0.2919861108 - - PREDICTED: probable pectate lyase 5 [Populus euphratica]
20 Hb_021409_130 0.2964218338 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like isoform 1 [Glycine max]

Gene co-expression network

sample Hb_002545_030 Hb_002545_030 Hb_000441_010 Hb_000441_010 Hb_002545_030--Hb_000441_010 Hb_014720_060 Hb_014720_060 Hb_002545_030--Hb_014720_060 Hb_131101_010 Hb_131101_010 Hb_002545_030--Hb_131101_010 Hb_001761_110 Hb_001761_110 Hb_002545_030--Hb_001761_110 Hb_000964_160 Hb_000964_160 Hb_002545_030--Hb_000964_160 Hb_007245_010 Hb_007245_010 Hb_002545_030--Hb_007245_010 Hb_000441_010--Hb_014720_060 Hb_000441_010--Hb_131101_010 Hb_000441_010--Hb_001761_110 Hb_000441_010--Hb_000964_160 Hb_000441_010--Hb_007245_010 Hb_014720_060--Hb_131101_010 Hb_014720_060--Hb_001761_110 Hb_014720_060--Hb_000964_160 Hb_014720_060--Hb_007245_010 Hb_131101_010--Hb_001761_110 Hb_131101_010--Hb_000964_160 Hb_131101_010--Hb_007245_010 Hb_174245_020 Hb_174245_020 Hb_001761_110--Hb_174245_020 Hb_001761_110--Hb_000964_160 Hb_000964_160--Hb_007245_010 Hb_043295_010 Hb_043295_010 Hb_000964_160--Hb_043295_010 Hb_007245_010--Hb_043295_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0116364 0 0.00864606 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis