Hb_010174_050

Information

Type -
Description -
Location Contig10174: 59227-63655
Sequence    

Annotation

kegg
ID mdm:103425513
description probable pectate lyase 5
nr
ID XP_011029589.1
description PREDICTED: probable pectate lyase 5 [Populus euphratica]
swissprot
ID Q9FXD8
description Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2
trembl
ID Q93XJ1
description Pectate lyase OS=Salix gilgiana GN=SgPL1 PE=2 SV=1
Gene Ontology
ID GO:0005576
description probable pectate lyase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010174_050 0.0 - - PREDICTED: probable pectate lyase 5 [Populus euphratica]
2 Hb_001007_080 0.1467548594 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
3 Hb_019181_020 0.2429888874 - - PREDICTED: uncharacterized protein LOC105763068 [Gossypium raimondii]
4 Hb_120820_010 0.2643597539 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
5 Hb_043295_010 0.2810491923 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
6 Hb_007245_010 0.2810668935 - - PREDICTED: uncharacterized protein LOC104783698 [Camelina sativa]
7 Hb_000964_160 0.2816873176 - - PREDICTED: uncharacterized protein LOC102617979 isoform X2 [Citrus sinensis]
8 Hb_002545_030 0.2919861108 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_000441_010 0.2935423315 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
10 Hb_014720_060 0.2937767203 - - hypothetical protein JCGZ_11469 [Jatropha curcas]
11 Hb_000274_030 0.2979240655 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
12 Hb_131101_010 0.2990563398 - - -
13 Hb_001761_110 0.3006784843 - - Contains similarity to Cf-2.2 gene gb
14 Hb_003266_120 0.3110938609 - - PREDICTED: uncharacterized protein LOC105650228 [Jatropha curcas]
15 Hb_021409_130 0.3118615928 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like isoform 1 [Glycine max]
16 Hb_183671_010 0.3193841103 - - serine carboxypeptidase, putative [Ricinus communis]
17 Hb_174245_020 0.3285721265 - - -
18 Hb_011903_010 0.3353039163 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_001959_230 0.3395171833 - - PREDICTED: uncharacterized protein LOC105638436 [Jatropha curcas]
20 Hb_000964_100 0.3434798935 - - PREDICTED: uncharacterized protein LOC105628699 [Jatropha curcas]

Gene co-expression network

sample Hb_010174_050 Hb_010174_050 Hb_001007_080 Hb_001007_080 Hb_010174_050--Hb_001007_080 Hb_019181_020 Hb_019181_020 Hb_010174_050--Hb_019181_020 Hb_120820_010 Hb_120820_010 Hb_010174_050--Hb_120820_010 Hb_043295_010 Hb_043295_010 Hb_010174_050--Hb_043295_010 Hb_007245_010 Hb_007245_010 Hb_010174_050--Hb_007245_010 Hb_000964_160 Hb_000964_160 Hb_010174_050--Hb_000964_160 Hb_003266_120 Hb_003266_120 Hb_001007_080--Hb_003266_120 Hb_000274_030 Hb_000274_030 Hb_001007_080--Hb_000274_030 Hb_011364_030 Hb_011364_030 Hb_001007_080--Hb_011364_030 Hb_000472_010 Hb_000472_010 Hb_001007_080--Hb_000472_010 Hb_006620_080 Hb_006620_080 Hb_001007_080--Hb_006620_080 Hb_019181_020--Hb_120820_010 Hb_183671_010 Hb_183671_010 Hb_019181_020--Hb_183671_010 Hb_005601_030 Hb_005601_030 Hb_019181_020--Hb_005601_030 Hb_115832_010 Hb_115832_010 Hb_019181_020--Hb_115832_010 Hb_001301_140 Hb_001301_140 Hb_019181_020--Hb_001301_140 Hb_120820_010--Hb_005601_030 Hb_120820_010--Hb_183671_010 Hb_120820_010--Hb_115832_010 Hb_000362_140 Hb_000362_140 Hb_120820_010--Hb_000362_140 Hb_043295_010--Hb_007245_010 Hb_043295_010--Hb_000964_160 Hb_002545_030 Hb_002545_030 Hb_043295_010--Hb_002545_030 Hb_000441_010 Hb_000441_010 Hb_043295_010--Hb_000441_010 Hb_014720_060 Hb_014720_060 Hb_043295_010--Hb_014720_060 Hb_131101_010 Hb_131101_010 Hb_043295_010--Hb_131101_010 Hb_007245_010--Hb_000964_160 Hb_007245_010--Hb_002545_030 Hb_007245_010--Hb_000441_010 Hb_007245_010--Hb_014720_060 Hb_007245_010--Hb_131101_010 Hb_000964_160--Hb_002545_030 Hb_000964_160--Hb_000441_010 Hb_000964_160--Hb_014720_060 Hb_000964_160--Hb_131101_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0464828 0 0.0213378 0.0114623 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis