Hb_003266_120

Information

Type -
Description -
Location Contig3266: 69659-73146
Sequence    

Annotation

kegg
ID rcu:RCOM_0176270
description hypothetical protein
nr
ID XP_012092488.1
description PREDICTED: uncharacterized protein LOC105650228 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JPM6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21960 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003266_120 0.0 - - PREDICTED: uncharacterized protein LOC105650228 [Jatropha curcas]
2 Hb_000274_030 0.0330320307 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
3 Hb_043295_010 0.2010725069 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
4 Hb_007245_010 0.2011716188 - - PREDICTED: uncharacterized protein LOC104783698 [Camelina sativa]
5 Hb_000964_160 0.2045379015 - - PREDICTED: uncharacterized protein LOC102617979 isoform X2 [Citrus sinensis]
6 Hb_001248_040 0.2056079153 - - -
7 Hb_021409_130 0.2368457176 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like isoform 1 [Glycine max]
8 Hb_002545_030 0.2450143738 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_000441_010 0.2498157087 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
10 Hb_014720_060 0.2505211783 - - hypothetical protein JCGZ_11469 [Jatropha curcas]
11 Hb_131101_010 0.2654037938 - - -
12 Hb_001761_110 0.2696527393 - - Contains similarity to Cf-2.2 gene gb
13 Hb_001007_080 0.2714610699 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
14 Hb_000011_030 0.2975844121 - - hypothetical protein POPTR_0003s18920g [Populus trichocarpa]
15 Hb_000015_110 0.2975844121 - - hypothetical protein MIMGU_mgv1a020753mg, partial [Erythranthe guttata]
16 Hb_000029_040 0.2975844121 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000030_110 0.2975844121 - - -
18 Hb_000034_130 0.2975844121 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_000046_470 0.2975844121 - - glutaredoxin, grx, putative [Ricinus communis]
20 Hb_000058_010 0.2975844121 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_003266_120 Hb_003266_120 Hb_000274_030 Hb_000274_030 Hb_003266_120--Hb_000274_030 Hb_043295_010 Hb_043295_010 Hb_003266_120--Hb_043295_010 Hb_007245_010 Hb_007245_010 Hb_003266_120--Hb_007245_010 Hb_000964_160 Hb_000964_160 Hb_003266_120--Hb_000964_160 Hb_001248_040 Hb_001248_040 Hb_003266_120--Hb_001248_040 Hb_021409_130 Hb_021409_130 Hb_003266_120--Hb_021409_130 Hb_000274_030--Hb_043295_010 Hb_000274_030--Hb_007245_010 Hb_000274_030--Hb_000964_160 Hb_000274_030--Hb_001248_040 Hb_002545_030 Hb_002545_030 Hb_000274_030--Hb_002545_030 Hb_043295_010--Hb_007245_010 Hb_043295_010--Hb_000964_160 Hb_043295_010--Hb_002545_030 Hb_000441_010 Hb_000441_010 Hb_043295_010--Hb_000441_010 Hb_014720_060 Hb_014720_060 Hb_043295_010--Hb_014720_060 Hb_131101_010 Hb_131101_010 Hb_043295_010--Hb_131101_010 Hb_007245_010--Hb_000964_160 Hb_007245_010--Hb_002545_030 Hb_007245_010--Hb_000441_010 Hb_007245_010--Hb_014720_060 Hb_007245_010--Hb_131101_010 Hb_000964_160--Hb_002545_030 Hb_000964_160--Hb_000441_010 Hb_000964_160--Hb_014720_060 Hb_000964_160--Hb_131101_010 Hb_001248_040--Hb_021409_130 Hb_001248_040--Hb_043295_010 Hb_001248_040--Hb_007245_010 Hb_001248_040--Hb_000964_160 Hb_021409_130--Hb_000274_030 Hb_021409_130--Hb_043295_010 Hb_021409_130--Hb_007245_010 Hb_021409_130--Hb_000964_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.115443 0 0.0230158 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis