Hb_021409_130

Information

Type -
Description -
Location Contig21409: 91129-93160
Sequence    

Annotation

kegg
ID gmx:100794347
description short-chain dehydrogenase TIC 32, chloroplastic-like
nr
ID XP_003530511.1
description PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like isoform 1 [Glycine max]
swissprot
ID A2RVM0
description Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana GN=TIC32 PE=2 SV=1
trembl
ID I1KPN7
description Uncharacterized protein OS=Glycine max PE=3 SV=1
Gene Ontology
ID GO:0016630
description short-chain dehydrogenase tic chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22123: 91845-92332
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021409_130 0.0 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like isoform 1 [Glycine max]
2 Hb_001248_040 0.153888857 - - -
3 Hb_000274_030 0.231728845 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
4 Hb_003266_120 0.2368457176 - - PREDICTED: uncharacterized protein LOC105650228 [Jatropha curcas]
5 Hb_043295_010 0.2714518286 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
6 Hb_007245_010 0.2715029977 - - PREDICTED: uncharacterized protein LOC104783698 [Camelina sativa]
7 Hb_000964_160 0.2732558432 - - PREDICTED: uncharacterized protein LOC102617979 isoform X2 [Citrus sinensis]
8 Hb_000472_010 0.280604106 - - UDP-glucosyltransferase, putative [Ricinus communis]
9 Hb_002545_030 0.2964218338 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_000441_010 0.299402547 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
11 Hb_014720_060 0.2998442967 - - hypothetical protein JCGZ_11469 [Jatropha curcas]
12 Hb_001007_080 0.3016173643 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
13 Hb_002843_090 0.3091970626 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
14 Hb_131101_010 0.3093805186 - - -
15 Hb_000200_190 0.3095622361 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 15 [Jatropha curcas]
16 Hb_010174_050 0.3118615928 - - PREDICTED: probable pectate lyase 5 [Populus euphratica]
17 Hb_001761_110 0.3121761316 - - Contains similarity to Cf-2.2 gene gb
18 Hb_087221_010 0.3164899675 - - hypothetical protein CISIN_1g033698mg [Citrus sinensis]
19 Hb_000270_860 0.3197119799 - - conserved hypothetical protein [Ricinus communis]
20 Hb_068347_010 0.343127023 - - -

Gene co-expression network

sample Hb_021409_130 Hb_021409_130 Hb_001248_040 Hb_001248_040 Hb_021409_130--Hb_001248_040 Hb_000274_030 Hb_000274_030 Hb_021409_130--Hb_000274_030 Hb_003266_120 Hb_003266_120 Hb_021409_130--Hb_003266_120 Hb_043295_010 Hb_043295_010 Hb_021409_130--Hb_043295_010 Hb_007245_010 Hb_007245_010 Hb_021409_130--Hb_007245_010 Hb_000964_160 Hb_000964_160 Hb_021409_130--Hb_000964_160 Hb_001248_040--Hb_003266_120 Hb_001248_040--Hb_000274_030 Hb_001248_040--Hb_043295_010 Hb_001248_040--Hb_007245_010 Hb_001248_040--Hb_000964_160 Hb_000274_030--Hb_003266_120 Hb_000274_030--Hb_043295_010 Hb_000274_030--Hb_007245_010 Hb_000274_030--Hb_000964_160 Hb_002545_030 Hb_002545_030 Hb_000274_030--Hb_002545_030 Hb_003266_120--Hb_043295_010 Hb_003266_120--Hb_007245_010 Hb_003266_120--Hb_000964_160 Hb_043295_010--Hb_007245_010 Hb_043295_010--Hb_000964_160 Hb_043295_010--Hb_002545_030 Hb_000441_010 Hb_000441_010 Hb_043295_010--Hb_000441_010 Hb_014720_060 Hb_014720_060 Hb_043295_010--Hb_014720_060 Hb_131101_010 Hb_131101_010 Hb_043295_010--Hb_131101_010 Hb_007245_010--Hb_000964_160 Hb_007245_010--Hb_002545_030 Hb_007245_010--Hb_000441_010 Hb_007245_010--Hb_014720_060 Hb_007245_010--Hb_131101_010 Hb_000964_160--Hb_002545_030 Hb_000964_160--Hb_000441_010 Hb_000964_160--Hb_014720_060 Hb_000964_160--Hb_131101_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.68508 0.0466388 1.02113 0.0741673 0.106379 0.102061
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.208227

CAGE analysis