Hb_001248_040

Information

Type -
Description -
Location Contig1248: 46798-47298
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001248_040 0.0 - - -
2 Hb_021409_130 0.153888857 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like isoform 1 [Glycine max]
3 Hb_003266_120 0.2056079153 - - PREDICTED: uncharacterized protein LOC105650228 [Jatropha curcas]
4 Hb_000274_030 0.2059402767 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
5 Hb_043295_010 0.2747203907 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
6 Hb_007245_010 0.2747849539 - - PREDICTED: uncharacterized protein LOC104783698 [Camelina sativa]
7 Hb_000964_160 0.2769890978 - - PREDICTED: uncharacterized protein LOC102617979 isoform X2 [Citrus sinensis]
8 Hb_000472_010 0.2967239111 - - UDP-glucosyltransferase, putative [Ricinus communis]
9 Hb_000270_860 0.2985639831 - - conserved hypothetical protein [Ricinus communis]
10 Hb_087221_010 0.3008378217 - - hypothetical protein CISIN_1g033698mg [Citrus sinensis]
11 Hb_002545_030 0.3050449438 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_000441_010 0.30854268 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
13 Hb_014720_060 0.3090593263 - - hypothetical protein JCGZ_11469 [Jatropha curcas]
14 Hb_131101_010 0.3201133159 - - -
15 Hb_001761_110 0.3233210183 - - Contains similarity to Cf-2.2 gene gb
16 Hb_001007_080 0.334437388 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
17 Hb_000200_190 0.340967098 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 15 [Jatropha curcas]
18 Hb_068347_010 0.3511108927 - - -
19 Hb_000463_060 0.3515539363 - - PREDICTED: uncharacterized protein LOC105638432 [Jatropha curcas]
20 Hb_059436_010 0.3584163194 - - UDP-glucuronosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001248_040 Hb_001248_040 Hb_021409_130 Hb_021409_130 Hb_001248_040--Hb_021409_130 Hb_003266_120 Hb_003266_120 Hb_001248_040--Hb_003266_120 Hb_000274_030 Hb_000274_030 Hb_001248_040--Hb_000274_030 Hb_043295_010 Hb_043295_010 Hb_001248_040--Hb_043295_010 Hb_007245_010 Hb_007245_010 Hb_001248_040--Hb_007245_010 Hb_000964_160 Hb_000964_160 Hb_001248_040--Hb_000964_160 Hb_021409_130--Hb_000274_030 Hb_021409_130--Hb_003266_120 Hb_021409_130--Hb_043295_010 Hb_021409_130--Hb_007245_010 Hb_021409_130--Hb_000964_160 Hb_003266_120--Hb_000274_030 Hb_003266_120--Hb_043295_010 Hb_003266_120--Hb_007245_010 Hb_003266_120--Hb_000964_160 Hb_000274_030--Hb_043295_010 Hb_000274_030--Hb_007245_010 Hb_000274_030--Hb_000964_160 Hb_002545_030 Hb_002545_030 Hb_000274_030--Hb_002545_030 Hb_043295_010--Hb_007245_010 Hb_043295_010--Hb_000964_160 Hb_043295_010--Hb_002545_030 Hb_000441_010 Hb_000441_010 Hb_043295_010--Hb_000441_010 Hb_014720_060 Hb_014720_060 Hb_043295_010--Hb_014720_060 Hb_131101_010 Hb_131101_010 Hb_043295_010--Hb_131101_010 Hb_007245_010--Hb_000964_160 Hb_007245_010--Hb_002545_030 Hb_007245_010--Hb_000441_010 Hb_007245_010--Hb_014720_060 Hb_007245_010--Hb_131101_010 Hb_000964_160--Hb_002545_030 Hb_000964_160--Hb_000441_010 Hb_000964_160--Hb_014720_060 Hb_000964_160--Hb_131101_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.1271 0.792807 5.04236 0 0.348894 0.668358
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.224812 0 0.101165 0.368399

CAGE analysis