Hb_001258_070

Information

Type -
Description -
Location Contig1258: 86107-86430
Sequence    

Annotation

kegg
ID rcu:RCOM_0078700
description hypothetical protein
nr
ID XP_002533484.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T5G5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0078700 PE=4 SV=1
Gene Ontology
ID GO:0003676
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07886: 84097-85794
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001258_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001898_170 0.0979551744 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003159_060 0.1610640603 - - Uncharacterized protein TCM_001961 [Theobroma cacao]
4 Hb_000365_150 0.2092769243 - - GTP binding protein, putative [Ricinus communis]
5 Hb_101376_010 0.2376488509 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000345_180 0.2380371133 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007113_030 0.2483424924 - - -
8 Hb_036026_010 0.2792103019 transcription factor TF Family: FAR1 FAR-RED IMPAIRED RESPONSE [Medicago truncatula]
9 Hb_096473_010 0.2808037809 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
10 Hb_001301_140 0.2826806809 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
11 Hb_001269_120 0.2909133731 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF003-like [Jatropha curcas]
12 Hb_009535_010 0.2955040126 - - PREDICTED: DNA replication licensing factor MCM4 [Jatropha curcas]
13 Hb_007943_170 0.3024974882 - - PREDICTED: rho guanine nucleotide exchange factor 8-like [Jatropha curcas]
14 Hb_152868_010 0.3212628564 rubber biosynthesis Gene Name: REF5 small rubber particle protein [Hevea brasiliensis]
15 Hb_001006_050 0.3370073469 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
16 Hb_151094_020 0.337774308 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Prunus mume]
17 Hb_103452_010 0.338314035 - - hypothetical protein VITISV_027174 [Vitis vinifera]
18 Hb_135673_010 0.3386748719 - - Germin-like protein subfamily 1 member 6 precursor [Populus trichocarpa]
19 Hb_005356_030 0.3395892487 - - protein binding protein, putative [Ricinus communis]
20 Hb_004116_090 0.3401395213 - - -

Gene co-expression network

sample Hb_001258_070 Hb_001258_070 Hb_001898_170 Hb_001898_170 Hb_001258_070--Hb_001898_170 Hb_003159_060 Hb_003159_060 Hb_001258_070--Hb_003159_060 Hb_000365_150 Hb_000365_150 Hb_001258_070--Hb_000365_150 Hb_101376_010 Hb_101376_010 Hb_001258_070--Hb_101376_010 Hb_000345_180 Hb_000345_180 Hb_001258_070--Hb_000345_180 Hb_007113_030 Hb_007113_030 Hb_001258_070--Hb_007113_030 Hb_001898_170--Hb_003159_060 Hb_001898_170--Hb_000345_180 Hb_001898_170--Hb_000365_150 Hb_001301_140 Hb_001301_140 Hb_001898_170--Hb_001301_140 Hb_183671_010 Hb_183671_010 Hb_001898_170--Hb_183671_010 Hb_003159_060--Hb_000345_180 Hb_003159_060--Hb_001301_140 Hb_003159_060--Hb_000365_150 Hb_001514_170 Hb_001514_170 Hb_003159_060--Hb_001514_170 Hb_007943_170 Hb_007943_170 Hb_000365_150--Hb_007943_170 Hb_000365_150--Hb_001301_140 Hb_000365_150--Hb_000345_180 Hb_000438_030 Hb_000438_030 Hb_000365_150--Hb_000438_030 Hb_147060_010 Hb_147060_010 Hb_000365_150--Hb_147060_010 Hb_017469_090 Hb_017469_090 Hb_101376_010--Hb_017469_090 Hb_152868_010 Hb_152868_010 Hb_101376_010--Hb_152868_010 Hb_036026_010 Hb_036026_010 Hb_101376_010--Hb_036026_010 Hb_001005_180 Hb_001005_180 Hb_101376_010--Hb_001005_180 Hb_101376_010--Hb_001898_170 Hb_000345_180--Hb_001301_140 Hb_000345_180--Hb_007943_170 Hb_000345_180--Hb_001514_170 Hb_003020_340 Hb_003020_340 Hb_007113_030--Hb_003020_340 Hb_135673_010 Hb_135673_010 Hb_007113_030--Hb_135673_010 Hb_007113_030--Hb_152868_010 Hb_005356_030 Hb_005356_030 Hb_007113_030--Hb_005356_030 Hb_103452_010 Hb_103452_010 Hb_007113_030--Hb_103452_010 Hb_000002_150 Hb_000002_150 Hb_007113_030--Hb_000002_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.611595 0 0.869941 0.781913 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.668283 0

CAGE analysis