Hb_001005_180

Information

Type -
Description -
Location Contig1005: 203490-204849
Sequence    

Annotation

kegg
ID mdm:103402817
description LRR receptor-like serine/threonine-protein kinase RPK2
nr
ID KGN51134.1
description hypothetical protein Csa_5G464830 [Cucumis sativus]
swissprot
ID O82318
description Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=2 SV=1
trembl
ID A0A0A0KQI0
description Uncharacterized protein OS=Cucumis sativus GN=Csa_5G464830 PE=4 SV=1
Gene Ontology
ID GO:0016020
description lrr receptor-like serine threonine-protein kinase rpk2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001005_180 0.0 - - hypothetical protein Csa_5G464830 [Cucumis sativus]
2 Hb_152868_010 0.2112167748 rubber biosynthesis Gene Name: REF5 small rubber particle protein [Hevea brasiliensis]
3 Hb_017469_090 0.2362216749 - - Integrase, catalytic region, Zinc finger, CCHC-type, Peptidase aspartic, catalytic, putative [Theobroma cacao]
4 Hb_000364_200 0.239208898 - - o-methyltransferase, putative [Ricinus communis]
5 Hb_001538_170 0.2412381253 - - -
6 Hb_101376_010 0.2528247393 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000251_060 0.2639281231 - - PREDICTED: uncharacterized protein LOC105649757 isoform X2 [Jatropha curcas]
8 Hb_001198_140 0.2818689919 - - -
9 Hb_000772_070 0.282462774 - - PREDICTED: uncharacterized protein LOC105649697 [Jatropha curcas]
10 Hb_002747_010 0.2879489823 - - PREDICTED: alcohol dehydrogenase-like 1 [Jatropha curcas]
11 Hb_002966_030 0.2885461979 - - conserved hypothetical protein [Ricinus communis]
12 Hb_124625_010 0.2897390449 - - hypothetical protein JCGZ_01142 [Jatropha curcas]
13 Hb_011214_120 0.2908756866 - - PREDICTED: uncharacterized protein LOC105636139 [Jatropha curcas]
14 Hb_005396_010 0.2914472147 - - PREDICTED: interleukin enhancer-binding factor 3-B-like [Jatropha curcas]
15 Hb_000466_150 0.2915889415 - - hypothetical protein JCGZ_02123 [Jatropha curcas]
16 Hb_153457_010 0.292439427 - - Miraculin precursor, putative [Ricinus communis]
17 Hb_050898_020 0.2938975749 - - hypothetical protein JCGZ_19965 [Jatropha curcas]
18 Hb_012779_010 0.2946109463 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
19 Hb_000800_060 0.2991074508 - - hypothetical protein POPTR_0008s02870g [Populus trichocarpa]
20 Hb_090510_010 0.3001228674 - - hypothetical protein JCGZ_21650 [Jatropha curcas]

Gene co-expression network

sample Hb_001005_180 Hb_001005_180 Hb_152868_010 Hb_152868_010 Hb_001005_180--Hb_152868_010 Hb_017469_090 Hb_017469_090 Hb_001005_180--Hb_017469_090 Hb_000364_200 Hb_000364_200 Hb_001005_180--Hb_000364_200 Hb_001538_170 Hb_001538_170 Hb_001005_180--Hb_001538_170 Hb_101376_010 Hb_101376_010 Hb_001005_180--Hb_101376_010 Hb_000251_060 Hb_000251_060 Hb_001005_180--Hb_000251_060 Hb_007113_030 Hb_007113_030 Hb_152868_010--Hb_007113_030 Hb_000925_120 Hb_000925_120 Hb_152868_010--Hb_000925_120 Hb_055154_010 Hb_055154_010 Hb_152868_010--Hb_055154_010 Hb_116783_010 Hb_116783_010 Hb_152868_010--Hb_116783_010 Hb_001633_120 Hb_001633_120 Hb_152868_010--Hb_001633_120 Hb_090510_010 Hb_090510_010 Hb_152868_010--Hb_090510_010 Hb_017469_090--Hb_001538_170 Hb_017469_090--Hb_101376_010 Hb_001198_140 Hb_001198_140 Hb_017469_090--Hb_001198_140 Hb_000928_290 Hb_000928_290 Hb_017469_090--Hb_000928_290 Hb_017469_090--Hb_152868_010 Hb_011214_120 Hb_011214_120 Hb_000364_200--Hb_011214_120 Hb_000589_210 Hb_000589_210 Hb_000364_200--Hb_000589_210 Hb_014834_020 Hb_014834_020 Hb_000364_200--Hb_014834_020 Hb_000915_070 Hb_000915_070 Hb_000364_200--Hb_000915_070 Hb_001959_030 Hb_001959_030 Hb_000364_200--Hb_001959_030 Hb_000056_220 Hb_000056_220 Hb_000364_200--Hb_000056_220 Hb_001538_170--Hb_001198_140 Hb_001538_170--Hb_000928_290 Hb_001538_170--Hb_000364_200 Hb_147355_030 Hb_147355_030 Hb_001538_170--Hb_147355_030 Hb_001258_070 Hb_001258_070 Hb_101376_010--Hb_001258_070 Hb_101376_010--Hb_152868_010 Hb_036026_010 Hb_036026_010 Hb_101376_010--Hb_036026_010 Hb_001898_170 Hb_001898_170 Hb_101376_010--Hb_001898_170 Hb_005000_040 Hb_005000_040 Hb_000251_060--Hb_005000_040 Hb_000086_730 Hb_000086_730 Hb_000251_060--Hb_000086_730 Hb_080225_010 Hb_080225_010 Hb_000251_060--Hb_080225_010 Hb_000251_060--Hb_152868_010 Hb_000256_100 Hb_000256_100 Hb_000251_060--Hb_000256_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0318516 0 0.0125319 0.0258575 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.137169 0

CAGE analysis