Hb_001538_170

Information

Type -
Description -
Location Contig1538: 265396-265700
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001538_170 0.0 - - -
2 Hb_017469_090 0.1677681736 - - Integrase, catalytic region, Zinc finger, CCHC-type, Peptidase aspartic, catalytic, putative [Theobroma cacao]
3 Hb_001198_140 0.2395504703 - - -
4 Hb_001005_180 0.2412381253 - - hypothetical protein Csa_5G464830 [Cucumis sativus]
5 Hb_000928_290 0.27020589 - - PREDICTED: uncharacterized protein LOC104602212 [Nelumbo nucifera]
6 Hb_000364_200 0.275871844 - - o-methyltransferase, putative [Ricinus communis]
7 Hb_147355_030 0.2770079916 - - PREDICTED: putative disease resistance protein RGA3 isoform X5 [Populus euphratica]
8 Hb_027892_070 0.2846512477 - - conserved hypothetical protein [Ricinus communis]
9 Hb_113803_010 0.3003812847 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_028995_030 0.3024234325 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
11 Hb_006142_010 0.3074805489 - - hypothetical protein CICLE_v10013815mg, partial [Citrus clementina]
12 Hb_001863_050 0.3075844689 - - PREDICTED: wall-associated receptor kinase-like 8 [Jatropha curcas]
13 Hb_000115_180 0.3076898777 - - hypothetical protein RCOM_1308310 [Ricinus communis]
14 Hb_002231_140 0.3080089319 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
15 Hb_000028_540 0.3081351944 - - hypothetical protein POPTR_0012s03720g [Populus trichocarpa]
16 Hb_156683_010 0.3082635463 - - PREDICTED: uncharacterized protein At5g65660-like [Jatropha curcas]
17 Hb_012355_010 0.3099127816 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
18 Hb_176232_040 0.311745056 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003407_020 0.3146950021 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
20 Hb_001862_020 0.3156053585 - - PREDICTED: uncharacterized protein LOC103652604 [Zea mays]

Gene co-expression network

sample Hb_001538_170 Hb_001538_170 Hb_017469_090 Hb_017469_090 Hb_001538_170--Hb_017469_090 Hb_001198_140 Hb_001198_140 Hb_001538_170--Hb_001198_140 Hb_001005_180 Hb_001005_180 Hb_001538_170--Hb_001005_180 Hb_000928_290 Hb_000928_290 Hb_001538_170--Hb_000928_290 Hb_000364_200 Hb_000364_200 Hb_001538_170--Hb_000364_200 Hb_147355_030 Hb_147355_030 Hb_001538_170--Hb_147355_030 Hb_017469_090--Hb_001005_180 Hb_101376_010 Hb_101376_010 Hb_017469_090--Hb_101376_010 Hb_017469_090--Hb_001198_140 Hb_017469_090--Hb_000928_290 Hb_152868_010 Hb_152868_010 Hb_017469_090--Hb_152868_010 Hb_001198_140--Hb_000928_290 Hb_001971_070 Hb_001971_070 Hb_001198_140--Hb_001971_070 Hb_010571_010 Hb_010571_010 Hb_001198_140--Hb_010571_010 Hb_027634_010 Hb_027634_010 Hb_001198_140--Hb_027634_010 Hb_164162_020 Hb_164162_020 Hb_001198_140--Hb_164162_020 Hb_001195_440 Hb_001195_440 Hb_001198_140--Hb_001195_440 Hb_001005_180--Hb_152868_010 Hb_001005_180--Hb_000364_200 Hb_001005_180--Hb_101376_010 Hb_000251_060 Hb_000251_060 Hb_001005_180--Hb_000251_060 Hb_000928_290--Hb_010571_010 Hb_000928_290--Hb_001971_070 Hb_001522_050 Hb_001522_050 Hb_000928_290--Hb_001522_050 Hb_000928_290--Hb_027634_010 Hb_006120_010 Hb_006120_010 Hb_000928_290--Hb_006120_010 Hb_011214_120 Hb_011214_120 Hb_000364_200--Hb_011214_120 Hb_000589_210 Hb_000589_210 Hb_000364_200--Hb_000589_210 Hb_014834_020 Hb_014834_020 Hb_000364_200--Hb_014834_020 Hb_000915_070 Hb_000915_070 Hb_000364_200--Hb_000915_070 Hb_001959_030 Hb_001959_030 Hb_000364_200--Hb_001959_030 Hb_000056_220 Hb_000056_220 Hb_000364_200--Hb_000056_220 Hb_113803_010 Hb_113803_010 Hb_147355_030--Hb_113803_010 Hb_002267_120 Hb_002267_120 Hb_147355_030--Hb_002267_120 Hb_006971_080 Hb_006971_080 Hb_147355_030--Hb_006971_080 Hb_005392_100 Hb_005392_100 Hb_147355_030--Hb_005392_100 Hb_008226_110 Hb_008226_110 Hb_147355_030--Hb_008226_110 Hb_012355_010 Hb_012355_010 Hb_147355_030--Hb_012355_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.993899 0 0 1.49091 0 0.289627
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.48924 0

CAGE analysis