Hb_152868_010

Information

Type rubber biosynthesis
Description Gene Name: REF5
Location Contig152868: 20648-21280
Sequence    

Annotation

kegg
ID pop:POPTR_0013s01800g
description POPTRDRAFT_662705; rubber elongation factor family protein
nr
ID AAO66432.1
description small rubber particle protein [Hevea brasiliensis]
swissprot
ID P15252
description Rubber elongation factor protein OS=Hevea brasiliensis PE=1 SV=2
trembl
ID Q84T88
description REF-like stress related protein 2 OS=Hevea brasiliensis GN=SRPP PE=2 SV=1
Gene Ontology
ID GO:0003746
description rubber elongation factor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_152868_010 0.0 rubber biosynthesis Gene Name: REF5 small rubber particle protein [Hevea brasiliensis]
2 Hb_007113_030 0.1702627675 - - -
3 Hb_000925_120 0.178102748 - - Spotted leaf protein, putative [Ricinus communis]
4 Hb_055154_010 0.1785796113 - - PREDICTED: laccase-7 [Jatropha curcas]
5 Hb_116783_010 0.1847143891 - - hypothetical protein POPTR_0011s16190g [Populus trichocarpa]
6 Hb_001633_120 0.1954948263 - - PREDICTED: uncharacterized protein LOC105630199 [Jatropha curcas]
7 Hb_090510_010 0.1985757776 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
8 Hb_003020_340 0.2044311894 - - PREDICTED: uncharacterized protein LOC105631327 [Jatropha curcas]
9 Hb_000800_060 0.2062066301 - - hypothetical protein POPTR_0008s02870g [Populus trichocarpa]
10 Hb_002809_020 0.2065198189 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
11 Hb_000147_010 0.2072323428 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
12 Hb_001005_180 0.2112167748 - - hypothetical protein Csa_5G464830 [Cucumis sativus]
13 Hb_098030_010 0.2136471254 - - hypothetical protein JCGZ_06251 [Jatropha curcas]
14 Hb_178252_010 0.2146919548 - - hypothetical protein POPTR_0018s01890g [Populus trichocarpa]
15 Hb_005396_010 0.2163733912 - - PREDICTED: interleukin enhancer-binding factor 3-B-like [Jatropha curcas]
16 Hb_000002_150 0.2197726902 - - conserved hypothetical protein [Ricinus communis]
17 Hb_011214_120 0.2219628015 - - PREDICTED: uncharacterized protein LOC105636139 [Jatropha curcas]
18 Hb_069151_010 0.2231745659 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Gossypium raimondii]
19 Hb_003226_050 0.2255935098 - - Pectinesterase-3 precursor, putative [Ricinus communis]
20 Hb_000705_110 0.2279131714 - - hypothetical protein POPTR_0005s09220g [Populus trichocarpa]

Gene co-expression network

sample Hb_152868_010 Hb_152868_010 Hb_007113_030 Hb_007113_030 Hb_152868_010--Hb_007113_030 Hb_000925_120 Hb_000925_120 Hb_152868_010--Hb_000925_120 Hb_055154_010 Hb_055154_010 Hb_152868_010--Hb_055154_010 Hb_116783_010 Hb_116783_010 Hb_152868_010--Hb_116783_010 Hb_001633_120 Hb_001633_120 Hb_152868_010--Hb_001633_120 Hb_090510_010 Hb_090510_010 Hb_152868_010--Hb_090510_010 Hb_003020_340 Hb_003020_340 Hb_007113_030--Hb_003020_340 Hb_135673_010 Hb_135673_010 Hb_007113_030--Hb_135673_010 Hb_005356_030 Hb_005356_030 Hb_007113_030--Hb_005356_030 Hb_103452_010 Hb_103452_010 Hb_007113_030--Hb_103452_010 Hb_000002_150 Hb_000002_150 Hb_007113_030--Hb_000002_150 Hb_000925_120--Hb_116783_010 Hb_000147_010 Hb_000147_010 Hb_000925_120--Hb_000147_010 Hb_000925_120--Hb_055154_010 Hb_000925_120--Hb_003020_340 Hb_000925_120--Hb_000002_150 Hb_002809_020 Hb_002809_020 Hb_000925_120--Hb_002809_020 Hb_055154_010--Hb_090510_010 Hb_000800_060 Hb_000800_060 Hb_055154_010--Hb_000800_060 Hb_069151_010 Hb_069151_010 Hb_055154_010--Hb_069151_010 Hb_055154_010--Hb_003020_340 Hb_055154_010--Hb_116783_010 Hb_116783_010--Hb_000147_010 Hb_116783_010--Hb_090510_010 Hb_116783_010--Hb_002809_020 Hb_001242_020 Hb_001242_020 Hb_116783_010--Hb_001242_020 Hb_000705_110 Hb_000705_110 Hb_001633_120--Hb_000705_110 Hb_002437_010 Hb_002437_010 Hb_001633_120--Hb_002437_010 Hb_001633_120--Hb_001242_020 Hb_000161_230 Hb_000161_230 Hb_001633_120--Hb_000161_230 Hb_000187_110 Hb_000187_110 Hb_001633_120--Hb_000187_110 Hb_003226_050 Hb_003226_050 Hb_001633_120--Hb_003226_050 Hb_090510_010--Hb_000800_060 Hb_005396_010 Hb_005396_010 Hb_090510_010--Hb_005396_010 Hb_124625_010 Hb_124625_010 Hb_090510_010--Hb_124625_010 Hb_090510_010--Hb_069151_010 Hb_000668_070 Hb_000668_070 Hb_090510_010--Hb_000668_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.174287 0 0.442839 0.688028 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.66434 0

CAGE analysis