Hb_000928_290

Information

Type -
Description -
Location Contig928: 245161-254483
Sequence    

Annotation

kegg
ID vvi:100246830
description uncharacterized LOC100246830
nr
ID XP_010264127.1
description PREDICTED: uncharacterized protein LOC104602212 [Nelumbo nucifera]
swissprot
ID Q9FQA3
description Glutathione transferase GST 23 OS=Zea mays PE=2 SV=1
trembl
ID A0A087HQ28
description Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G231500 PE=4 SV=1
Gene Ontology
ID GO:0005515
description glutathione s-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62785: 244537-244844
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000928_290 0.0 - - PREDICTED: uncharacterized protein LOC104602212 [Nelumbo nucifera]
2 Hb_001198_140 0.0515570578 - - -
3 Hb_010571_010 0.1472452077 - - PREDICTED: non-symbiotic hemoglobin 2 [Jatropha curcas]
4 Hb_001971_070 0.1512740004 - - unnamed protein product [Coffea canephora]
5 Hb_001522_050 0.1675951053 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Jatropha curcas]
6 Hb_027634_010 0.176349497 - - protein binding protein, putative [Ricinus communis]
7 Hb_006120_010 0.1804012551 - - invertase inhibitor [Manihot esculenta]
8 Hb_002499_020 0.1809358777 - - hevamine-A precursor, putative [Ricinus communis]
9 Hb_022181_010 0.1818515033 - - PREDICTED: peroxidase 19 [Jatropha curcas]
10 Hb_007181_080 0.1835354784 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
11 Hb_164162_020 0.1839281478 - - PREDICTED: uncharacterized protein LOC105646964 [Jatropha curcas]
12 Hb_001195_440 0.183943867 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
13 Hb_000077_450 0.1864588799 - - o-methyltransferase, putative [Ricinus communis]
14 Hb_006538_070 0.188962428 - - hypothetical protein JCGZ_18339 [Jatropha curcas]
15 Hb_001901_010 0.1898951673 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
16 Hb_046191_010 0.1900240568 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_003469_030 0.1919936208 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
18 Hb_021418_010 0.1954063051 - - PREDICTED: probable pectate lyase 12 [Prunus mume]
19 Hb_006153_200 0.1980800046 - - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Theobroma cacao]
20 Hb_000521_340 0.2029354789 - - PREDICTED: beta-glucosidase 13-like [Jatropha curcas]

Gene co-expression network

sample Hb_000928_290 Hb_000928_290 Hb_001198_140 Hb_001198_140 Hb_000928_290--Hb_001198_140 Hb_010571_010 Hb_010571_010 Hb_000928_290--Hb_010571_010 Hb_001971_070 Hb_001971_070 Hb_000928_290--Hb_001971_070 Hb_001522_050 Hb_001522_050 Hb_000928_290--Hb_001522_050 Hb_027634_010 Hb_027634_010 Hb_000928_290--Hb_027634_010 Hb_006120_010 Hb_006120_010 Hb_000928_290--Hb_006120_010 Hb_001198_140--Hb_001971_070 Hb_001198_140--Hb_010571_010 Hb_001198_140--Hb_027634_010 Hb_164162_020 Hb_164162_020 Hb_001198_140--Hb_164162_020 Hb_001195_440 Hb_001195_440 Hb_001198_140--Hb_001195_440 Hb_002499_020 Hb_002499_020 Hb_010571_010--Hb_002499_020 Hb_046191_010 Hb_046191_010 Hb_010571_010--Hb_046191_010 Hb_003469_030 Hb_003469_030 Hb_010571_010--Hb_003469_030 Hb_010571_010--Hb_006120_010 Hb_007181_080 Hb_007181_080 Hb_010571_010--Hb_007181_080 Hb_005056_030 Hb_005056_030 Hb_010571_010--Hb_005056_030 Hb_001901_010 Hb_001901_010 Hb_001971_070--Hb_001901_010 Hb_001971_070--Hb_164162_020 Hb_004544_080 Hb_004544_080 Hb_001971_070--Hb_004544_080 Hb_003462_150 Hb_003462_150 Hb_001971_070--Hb_003462_150 Hb_006538_070 Hb_006538_070 Hb_001971_070--Hb_006538_070 Hb_002999_090 Hb_002999_090 Hb_001971_070--Hb_002999_090 Hb_001522_050--Hb_003469_030 Hb_020805_110 Hb_020805_110 Hb_001522_050--Hb_020805_110 Hb_003090_230 Hb_003090_230 Hb_001522_050--Hb_003090_230 Hb_022181_010 Hb_022181_010 Hb_001522_050--Hb_022181_010 Hb_000676_380 Hb_000676_380 Hb_001522_050--Hb_000676_380 Hb_000670_080 Hb_000670_080 Hb_001522_050--Hb_000670_080 Hb_000175_480 Hb_000175_480 Hb_027634_010--Hb_000175_480 Hb_002042_200 Hb_002042_200 Hb_027634_010--Hb_002042_200 Hb_001623_400 Hb_001623_400 Hb_027634_010--Hb_001623_400 Hb_018133_110 Hb_018133_110 Hb_027634_010--Hb_018133_110 Hb_001959_030 Hb_001959_030 Hb_027634_010--Hb_001959_030 Hb_004122_030 Hb_004122_030 Hb_027634_010--Hb_004122_030 Hb_003058_180 Hb_003058_180 Hb_006120_010--Hb_003058_180 Hb_006120_010--Hb_046191_010 Hb_006120_010--Hb_002499_020 Hb_000230_160 Hb_000230_160 Hb_006120_010--Hb_000230_160 Hb_000077_450 Hb_000077_450 Hb_006120_010--Hb_000077_450 Hb_188923_010 Hb_188923_010 Hb_006120_010--Hb_188923_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0198832 0.0318543 0 0.137577 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.378241 0

CAGE analysis