Hb_000670_080

Information

Type -
Description -
Location Contig670: 133568-134482
Sequence    

Annotation

kegg
ID rcu:RCOM_1589240
description hypothetical protein
nr
ID XP_002510157.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8L9J9
description Probable carbohydrate esterase At4g34215 OS=Arabidopsis thaliana GN=At4g34215 PE=1 SV=2
trembl
ID B9R764
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1589240 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000670_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_131029_010 0.1107549837 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
3 Hb_095532_010 0.1298590766 - - BnaC05g27570D [Brassica napus]
4 Hb_001522_050 0.1358075692 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Jatropha curcas]
5 Hb_006326_020 0.1366332316 - - -
6 Hb_000032_330 0.1475916078 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004875_040 0.154687158 - - PREDICTED: uncharacterized protein LOC105645797 [Jatropha curcas]
8 Hb_000098_210 0.1598141249 - - PREDICTED: uncharacterized protein LOC105633345 [Jatropha curcas]
9 Hb_003469_030 0.1613491483 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
10 Hb_002368_080 0.1614729227 - - PREDICTED: transcription factor SCREAM2-like isoform X2 [Jatropha curcas]
11 Hb_020805_110 0.1654404888 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
12 Hb_001544_010 0.166691645 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000166_010 0.1667503205 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
14 Hb_082864_010 0.1667571468 - - JHL25H03.10 [Jatropha curcas]
15 Hb_091368_010 0.1669057452 - - gibberellin 20-oxidase, putative [Ricinus communis]
16 Hb_042666_010 0.1674966545 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
17 Hb_001232_030 0.1677550146 - - hypothetical protein POPTR_0001s18270g [Populus trichocarpa]
18 Hb_000940_090 0.1684386251 - - hypothetical protein CISIN_1g046520mg [Citrus sinensis]
19 Hb_000156_020 0.1687102029 - - PREDICTED: la-related protein 6A [Jatropha curcas]
20 Hb_003176_030 0.1687102029 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Solanum lycopersicum]

Gene co-expression network

sample Hb_000670_080 Hb_000670_080 Hb_131029_010 Hb_131029_010 Hb_000670_080--Hb_131029_010 Hb_095532_010 Hb_095532_010 Hb_000670_080--Hb_095532_010 Hb_001522_050 Hb_001522_050 Hb_000670_080--Hb_001522_050 Hb_006326_020 Hb_006326_020 Hb_000670_080--Hb_006326_020 Hb_000032_330 Hb_000032_330 Hb_000670_080--Hb_000032_330 Hb_004875_040 Hb_004875_040 Hb_000670_080--Hb_004875_040 Hb_161346_010 Hb_161346_010 Hb_131029_010--Hb_161346_010 Hb_182831_020 Hb_182831_020 Hb_131029_010--Hb_182831_020 Hb_082864_010 Hb_082864_010 Hb_131029_010--Hb_082864_010 Hb_000166_010 Hb_000166_010 Hb_131029_010--Hb_000166_010 Hb_001544_010 Hb_001544_010 Hb_131029_010--Hb_001544_010 Hb_148817_010 Hb_148817_010 Hb_095532_010--Hb_148817_010 Hb_003469_030 Hb_003469_030 Hb_095532_010--Hb_003469_030 Hb_095532_010--Hb_000032_330 Hb_161981_010 Hb_161981_010 Hb_095532_010--Hb_161981_010 Hb_000521_350 Hb_000521_350 Hb_095532_010--Hb_000521_350 Hb_001522_050--Hb_003469_030 Hb_020805_110 Hb_020805_110 Hb_001522_050--Hb_020805_110 Hb_003090_230 Hb_003090_230 Hb_001522_050--Hb_003090_230 Hb_022181_010 Hb_022181_010 Hb_001522_050--Hb_022181_010 Hb_000676_380 Hb_000676_380 Hb_001522_050--Hb_000676_380 Hb_007007_020 Hb_007007_020 Hb_006326_020--Hb_007007_020 Hb_001975_170 Hb_001975_170 Hb_006326_020--Hb_001975_170 Hb_007017_130 Hb_007017_130 Hb_006326_020--Hb_007017_130 Hb_004634_010 Hb_004634_010 Hb_006326_020--Hb_004634_010 Hb_099777_010 Hb_099777_010 Hb_006326_020--Hb_099777_010 Hb_000967_070 Hb_000967_070 Hb_006326_020--Hb_000967_070 Hb_000098_210 Hb_000098_210 Hb_000032_330--Hb_000098_210 Hb_041063_010 Hb_041063_010 Hb_000032_330--Hb_041063_010 Hb_000032_330--Hb_148817_010 Hb_000032_330--Hb_004875_040 Hb_000032_330--Hb_020805_110 Hb_004875_040--Hb_020805_110 Hb_004875_040--Hb_148817_010 Hb_001856_150 Hb_001856_150 Hb_004875_040--Hb_001856_150 Hb_004875_040--Hb_000098_210 Hb_004875_040--Hb_000676_380 Hb_006314_020 Hb_006314_020 Hb_004875_040--Hb_006314_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0591425 0.163993 0 2.20521 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.66802 0

CAGE analysis