Hb_000915_070

Information

Type -
Description -
Location Contig915: 58357-61923
Sequence    

Annotation

kegg
ID rcu:RCOM_0017500
description ATP binding protein, putative
nr
ID XP_002530739.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9P6Q3
description Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1
trembl
ID B9SXM0
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0017500 PE=3 SV=1
Gene Ontology
ID GO:0005524
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62213: 58741-61871
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000915_070 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_025254_020 0.1528783578 - - PREDICTED: formate dehydrogenase, mitochondrial [Vitis vinifera]
3 Hb_001959_030 0.1543500328 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000098_310 0.1569892831 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
5 Hb_009823_010 0.1635573065 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
6 Hb_002597_010 0.168335332 - - PREDICTED: putative disease resistance protein RGA1 [Malus domestica]
7 Hb_000580_070 0.1687298833 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
8 Hb_080147_060 0.171831736 - - PREDICTED: cyclin-dependent kinase F-1 isoform X1 [Jatropha curcas]
9 Hb_003602_070 0.1730627906 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH93-like [Jatropha curcas]
10 Hb_001678_030 0.1798552057 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
11 Hb_000032_560 0.1800405835 - - hypothetical protein JCGZ_15037 [Jatropha curcas]
12 Hb_018133_110 0.1813571033 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
13 Hb_000976_440 0.1820417658 - - UDP-glucosyltransferase, putative [Ricinus communis]
14 Hb_000041_290 0.183149273 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
15 Hb_001268_330 0.1859222475 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
16 Hb_002311_370 0.1876643705 transcription factor TF Family: ERF ethylene-responsive transcription factor 3 [Hevea brasiliensis]
17 Hb_032631_050 0.189795137 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
18 Hb_000204_030 0.1913979114 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
19 Hb_007545_140 0.191909352 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105141503 [Populus euphratica]
20 Hb_002016_020 0.1920113242 - - RALFL33, putative [Ricinus communis]

Gene co-expression network

sample Hb_000915_070 Hb_000915_070 Hb_025254_020 Hb_025254_020 Hb_000915_070--Hb_025254_020 Hb_001959_030 Hb_001959_030 Hb_000915_070--Hb_001959_030 Hb_000098_310 Hb_000098_310 Hb_000915_070--Hb_000098_310 Hb_009823_010 Hb_009823_010 Hb_000915_070--Hb_009823_010 Hb_002597_010 Hb_002597_010 Hb_000915_070--Hb_002597_010 Hb_000580_070 Hb_000580_070 Hb_000915_070--Hb_000580_070 Hb_000099_020 Hb_000099_020 Hb_025254_020--Hb_000099_020 Hb_025254_020--Hb_001959_030 Hb_018133_110 Hb_018133_110 Hb_025254_020--Hb_018133_110 Hb_002042_200 Hb_002042_200 Hb_025254_020--Hb_002042_200 Hb_000032_560 Hb_000032_560 Hb_025254_020--Hb_000032_560 Hb_002016_020 Hb_002016_020 Hb_025254_020--Hb_002016_020 Hb_001959_030--Hb_002042_200 Hb_001959_030--Hb_002016_020 Hb_001959_030--Hb_018133_110 Hb_001369_620 Hb_001369_620 Hb_001959_030--Hb_001369_620 Hb_000175_480 Hb_000175_480 Hb_001959_030--Hb_000175_480 Hb_000098_310--Hb_009823_010 Hb_011200_020 Hb_011200_020 Hb_000098_310--Hb_011200_020 Hb_003576_050 Hb_003576_050 Hb_000098_310--Hb_003576_050 Hb_000181_160 Hb_000181_160 Hb_000098_310--Hb_000181_160 Hb_001408_050 Hb_001408_050 Hb_000098_310--Hb_001408_050 Hb_031042_030 Hb_031042_030 Hb_000098_310--Hb_031042_030 Hb_000976_440 Hb_000976_440 Hb_009823_010--Hb_000976_440 Hb_009823_010--Hb_003576_050 Hb_009823_010--Hb_001408_050 Hb_009823_010--Hb_000181_160 Hb_000638_090 Hb_000638_090 Hb_009823_010--Hb_000638_090 Hb_002597_010--Hb_000032_560 Hb_000005_230 Hb_000005_230 Hb_002597_010--Hb_000005_230 Hb_002597_010--Hb_002016_020 Hb_080147_060 Hb_080147_060 Hb_002597_010--Hb_080147_060 Hb_000347_230 Hb_000347_230 Hb_002597_010--Hb_000347_230 Hb_002597_010--Hb_018133_110 Hb_000580_070--Hb_000032_560 Hb_000580_070--Hb_018133_110 Hb_002749_070 Hb_002749_070 Hb_000580_070--Hb_002749_070 Hb_000487_240 Hb_000487_240 Hb_000580_070--Hb_000487_240 Hb_000025_740 Hb_000025_740 Hb_000580_070--Hb_000025_740 Hb_032050_050 Hb_032050_050 Hb_000580_070--Hb_032050_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.51422 7.67424 3.08556 11.1672 0.926177 1.29588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.22349 0.758521 1.80583 42.4095 1.05313

CAGE analysis