Hb_036026_010

Information

Type transcription factor
Description TF Family: FAR1
Location Contig36026: 575-9967
Sequence    

Annotation

kegg
ID mtr:MTR_6g071660
description FAR-RED IMPAIRED RESPONSE
nr
ID XP_003619906.1
description FAR-RED IMPAIRED RESPONSE [Medicago truncatula]
swissprot
ID Q6NQJ7
description Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana GN=FRS4 PE=2 SV=2
trembl
ID A0A0A0KIK5
description Uncharacterized protein OS=Cucumis sativus GN=Csa_6G538640 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_036026_010 0.0 transcription factor TF Family: FAR1 FAR-RED IMPAIRED RESPONSE [Medicago truncatula]
2 Hb_101376_010 0.2495620564 - - conserved hypothetical protein [Ricinus communis]
3 Hb_172572_010 0.2615243292 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
4 Hb_001258_070 0.2792103019 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001898_170 0.2884193206 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000737_020 0.2916683098 - - -
7 Hb_003159_060 0.2956375225 - - Uncharacterized protein TCM_001961 [Theobroma cacao]
8 Hb_002003_100 0.3089451036 - - -
9 Hb_000552_060 0.311277452 - - PREDICTED: theobromine synthase 2-like isoform X3 [Jatropha curcas]
10 Hb_005542_100 0.3119204764 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0013s03910g [Populus trichocarpa]
11 Hb_173741_010 0.316732582 - - PREDICTED: caffeoyl-CoA O-methyltransferase isoform X3 [Musa acuminata subsp. malaccensis]
12 Hb_002400_480 0.3216192662 - - PREDICTED: uncharacterized protein LOC105637596 [Jatropha curcas]
13 Hb_001832_220 0.3221722102 - - -
14 Hb_034280_010 0.3234120932 - - Protein bem46, putative [Ricinus communis]
15 Hb_002311_460 0.3239493491 - - ubiquitin-protein ligase, putative [Ricinus communis]
16 Hb_001489_140 0.324412038 transcription factor TF Family: AP2 hypothetical protein JCGZ_21694 [Jatropha curcas]
17 Hb_008026_010 0.3259806365 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 9 [Jatropha curcas]
18 Hb_169630_010 0.3283460828 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
19 Hb_074419_010 0.3321098875 - - PREDICTED: uncharacterized protein LOC105637596 [Jatropha curcas]
20 Hb_001195_240 0.3391630204 transcription factor TF Family: MYB-related PREDICTED: protein RADIALIS-like 3 [Jatropha curcas]

Gene co-expression network

sample Hb_036026_010 Hb_036026_010 Hb_101376_010 Hb_101376_010 Hb_036026_010--Hb_101376_010 Hb_172572_010 Hb_172572_010 Hb_036026_010--Hb_172572_010 Hb_001258_070 Hb_001258_070 Hb_036026_010--Hb_001258_070 Hb_001898_170 Hb_001898_170 Hb_036026_010--Hb_001898_170 Hb_000737_020 Hb_000737_020 Hb_036026_010--Hb_000737_020 Hb_003159_060 Hb_003159_060 Hb_036026_010--Hb_003159_060 Hb_101376_010--Hb_001258_070 Hb_017469_090 Hb_017469_090 Hb_101376_010--Hb_017469_090 Hb_152868_010 Hb_152868_010 Hb_101376_010--Hb_152868_010 Hb_001005_180 Hb_001005_180 Hb_101376_010--Hb_001005_180 Hb_101376_010--Hb_001898_170 Hb_094437_010 Hb_094437_010 Hb_172572_010--Hb_094437_010 Hb_000915_150 Hb_000915_150 Hb_172572_010--Hb_000915_150 Hb_154381_010 Hb_154381_010 Hb_172572_010--Hb_154381_010 Hb_003551_040 Hb_003551_040 Hb_172572_010--Hb_003551_040 Hb_010534_050 Hb_010534_050 Hb_172572_010--Hb_010534_050 Hb_001258_070--Hb_001898_170 Hb_001258_070--Hb_003159_060 Hb_000365_150 Hb_000365_150 Hb_001258_070--Hb_000365_150 Hb_000345_180 Hb_000345_180 Hb_001258_070--Hb_000345_180 Hb_007113_030 Hb_007113_030 Hb_001258_070--Hb_007113_030 Hb_001898_170--Hb_003159_060 Hb_001898_170--Hb_000345_180 Hb_001898_170--Hb_000365_150 Hb_001301_140 Hb_001301_140 Hb_001898_170--Hb_001301_140 Hb_183671_010 Hb_183671_010 Hb_001898_170--Hb_183671_010 Hb_002311_460 Hb_002311_460 Hb_000737_020--Hb_002311_460 Hb_001832_220 Hb_001832_220 Hb_000737_020--Hb_001832_220 Hb_000743_070 Hb_000743_070 Hb_000737_020--Hb_000743_070 Hb_000127_050 Hb_000127_050 Hb_000737_020--Hb_000127_050 Hb_160814_010 Hb_160814_010 Hb_000737_020--Hb_160814_010 Hb_004785_150 Hb_004785_150 Hb_000737_020--Hb_004785_150 Hb_003159_060--Hb_000345_180 Hb_003159_060--Hb_001301_140 Hb_003159_060--Hb_000365_150 Hb_001514_170 Hb_001514_170 Hb_003159_060--Hb_001514_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.036871 0 0.0290885 0.102347 0 0.0162071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0531258 0

CAGE analysis