Hb_010534_050

Information

Type -
Description -
Location Contig10534: 46844-48288
Sequence    

Annotation

kegg
ID rcu:RCOM_1198120
description 40S ribosomal protein S7, putative
nr
ID XP_012093023.1
description PREDICTED: 40S ribosomal protein S7 [Jatropha curcas]
swissprot
ID Q9C514
description 40S ribosomal protein S7-1 OS=Arabidopsis thaliana GN=RPS7A PE=2 SV=1
trembl
ID A0A067JKY0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05903 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010534_050 0.0 - - PREDICTED: 40S ribosomal protein S7 [Jatropha curcas]
2 Hb_001050_060 0.1832650485 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
3 Hb_001711_050 0.2343297118 - - -
4 Hb_000928_050 0.2349415873 - - PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]
5 Hb_071869_010 0.237859123 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
6 Hb_141296_010 0.2498305372 - - -
7 Hb_000206_190 0.2523734656 - - PREDICTED: F-box/LRR-repeat protein At4g14103-like [Pyrus x bretschneideri]
8 Hb_000082_020 0.2547550654 - - -
9 Hb_041025_010 0.2671491168 - - PREDICTED: uncharacterized protein LOC105635593 [Jatropha curcas]
10 Hb_081517_010 0.267409053 - - PREDICTED: putative potassium transporter 12 isoform X2 [Jatropha curcas]
11 Hb_138462_010 0.2676022332 - - PREDICTED: SUMO-conjugating enzyme UBC9-A-like isoform X1 [Elaeis guineensis]
12 Hb_004724_470 0.2695232053 - - Nitrilase, putative [Ricinus communis]
13 Hb_148131_010 0.2754936853 - - PREDICTED: ribosome biogenesis protein WDR12-like, partial [Jatropha curcas]
14 Hb_054541_010 0.2761739743 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
15 Hb_060458_010 0.2763537055 - - conserved hypothetical protein [Ricinus communis]
16 Hb_114079_010 0.276361194 - - hypothetical protein CICLE_v10008147mg [Citrus clementina]
17 Hb_000479_290 0.2769773817 - - PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 isoform X2 [Jatropha curcas]
18 Hb_002863_120 0.2771387395 desease resistance Gene Name: AAA_17 JHL25H03.3 [Jatropha curcas]
19 Hb_000505_070 0.2771670775 - - PREDICTED: heparanase-like protein 3 isoform X1 [Jatropha curcas]
20 Hb_012738_030 0.2775209904 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_010534_050 Hb_010534_050 Hb_001050_060 Hb_001050_060 Hb_010534_050--Hb_001050_060 Hb_001711_050 Hb_001711_050 Hb_010534_050--Hb_001711_050 Hb_000928_050 Hb_000928_050 Hb_010534_050--Hb_000928_050 Hb_071869_010 Hb_071869_010 Hb_010534_050--Hb_071869_010 Hb_141296_010 Hb_141296_010 Hb_010534_050--Hb_141296_010 Hb_000206_190 Hb_000206_190 Hb_010534_050--Hb_000206_190 Hb_000136_190 Hb_000136_190 Hb_001050_060--Hb_000136_190 Hb_001050_030 Hb_001050_030 Hb_001050_060--Hb_001050_030 Hb_041025_010 Hb_041025_010 Hb_001050_060--Hb_041025_010 Hb_004724_470 Hb_004724_470 Hb_001050_060--Hb_004724_470 Hb_000082_020 Hb_000082_020 Hb_001050_060--Hb_000082_020 Hb_160715_010 Hb_160715_010 Hb_001711_050--Hb_160715_010 Hb_002863_120 Hb_002863_120 Hb_001711_050--Hb_002863_120 Hb_001711_050--Hb_000928_050 Hb_000256_070 Hb_000256_070 Hb_001711_050--Hb_000256_070 Hb_138462_010 Hb_138462_010 Hb_001711_050--Hb_138462_010 Hb_000928_050--Hb_071869_010 Hb_002154_070 Hb_002154_070 Hb_000928_050--Hb_002154_070 Hb_006960_010 Hb_006960_010 Hb_000928_050--Hb_006960_010 Hb_000928_050--Hb_141296_010 Hb_071869_010--Hb_000206_190 Hb_071869_010--Hb_002154_070 Hb_024272_010 Hb_024272_010 Hb_071869_010--Hb_024272_010 Hb_010317_030 Hb_010317_030 Hb_071869_010--Hb_010317_030 Hb_000100_130 Hb_000100_130 Hb_071869_010--Hb_000100_130 Hb_060458_010 Hb_060458_010 Hb_141296_010--Hb_060458_010 Hb_000098_300 Hb_000098_300 Hb_141296_010--Hb_000098_300 Hb_141296_010--Hb_138462_010 Hb_060391_010 Hb_060391_010 Hb_141296_010--Hb_060391_010 Hb_007333_040 Hb_007333_040 Hb_141296_010--Hb_007333_040 Hb_141296_010--Hb_006960_010 Hb_000206_190--Hb_001050_030 Hb_102632_010 Hb_102632_010 Hb_000206_190--Hb_102632_010 Hb_135442_010 Hb_135442_010 Hb_000206_190--Hb_135442_010 Hb_000206_190--Hb_002154_070 Hb_000206_190--Hb_002863_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
118.186 45.8849 111.263 195.357 1.26983 365.152
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.23103 1.74111 52.5513 93.0218 39.8742

CAGE analysis