Hb_001050_060

Information

Type -
Description -
Location Contig1050: 93030-96520
Sequence    

Annotation

kegg
ID pop:POPTR_0011s036602
description hypothetical protein
nr
ID XP_006377277.1
description hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FY67
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0011s036602g PE=4 SV=1
Gene Ontology
ID GO:0000166
description g-type lectin s-receptor-like serine threonine-protein kinase at1g11410

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01705: 93023-96693 , PASA_asmbl_01707: 63094-96684
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001050_060 0.0 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
2 Hb_010534_050 0.1832650485 - - PREDICTED: 40S ribosomal protein S7 [Jatropha curcas]
3 Hb_000136_190 0.2114394941 - - PREDICTED: protein-S-isoprenylcysteine O-methyltransferase A-like isoform X1 [Jatropha curcas]
4 Hb_001050_030 0.2220483101 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
5 Hb_041025_010 0.2270018471 - - PREDICTED: uncharacterized protein LOC105635593 [Jatropha curcas]
6 Hb_004724_470 0.2278603482 - - Nitrilase, putative [Ricinus communis]
7 Hb_000082_020 0.2289180496 - - -
8 Hb_148131_010 0.2306872039 - - PREDICTED: ribosome biogenesis protein WDR12-like, partial [Jatropha curcas]
9 Hb_006422_030 0.2323577162 - - -
10 Hb_181441_010 0.2336026743 - - PREDICTED: uncharacterized protein LOC105640851 [Jatropha curcas]
11 Hb_051424_010 0.2359797788 - - PREDICTED: putative methyltransferase At1g22800 [Jatropha curcas]
12 Hb_003376_260 0.2375951912 - - PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]
13 Hb_008029_020 0.238448148 - - PREDICTED: uncharacterized protein LOC105631777 [Jatropha curcas]
14 Hb_060458_010 0.2404518672 - - conserved hypothetical protein [Ricinus communis]
15 Hb_046120_010 0.2428606287 - - -
16 Hb_000206_190 0.2433809809 - - PREDICTED: F-box/LRR-repeat protein At4g14103-like [Pyrus x bretschneideri]
17 Hb_002659_130 0.2453977606 - - -
18 Hb_000062_060 0.2512201028 transcription factor TF Family: Orphans multi-sensor hybrid histidine kinase [Plautia stali symbiont]
19 Hb_000100_130 0.2521770815 - - hypothetical protein VITISV_026702 [Vitis vinifera]
20 Hb_083641_010 0.253470935 - - SECY isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_001050_060 Hb_001050_060 Hb_010534_050 Hb_010534_050 Hb_001050_060--Hb_010534_050 Hb_000136_190 Hb_000136_190 Hb_001050_060--Hb_000136_190 Hb_001050_030 Hb_001050_030 Hb_001050_060--Hb_001050_030 Hb_041025_010 Hb_041025_010 Hb_001050_060--Hb_041025_010 Hb_004724_470 Hb_004724_470 Hb_001050_060--Hb_004724_470 Hb_000082_020 Hb_000082_020 Hb_001050_060--Hb_000082_020 Hb_001711_050 Hb_001711_050 Hb_010534_050--Hb_001711_050 Hb_000928_050 Hb_000928_050 Hb_010534_050--Hb_000928_050 Hb_071869_010 Hb_071869_010 Hb_010534_050--Hb_071869_010 Hb_141296_010 Hb_141296_010 Hb_010534_050--Hb_141296_010 Hb_000206_190 Hb_000206_190 Hb_010534_050--Hb_000206_190 Hb_003814_030 Hb_003814_030 Hb_000136_190--Hb_003814_030 Hb_002370_040 Hb_002370_040 Hb_000136_190--Hb_002370_040 Hb_000330_160 Hb_000330_160 Hb_000136_190--Hb_000330_160 Hb_000062_060 Hb_000062_060 Hb_000136_190--Hb_000062_060 Hb_001508_020 Hb_001508_020 Hb_000136_190--Hb_001508_020 Hb_004657_090 Hb_004657_090 Hb_000136_190--Hb_004657_090 Hb_001050_030--Hb_000206_190 Hb_000077_220 Hb_000077_220 Hb_001050_030--Hb_000077_220 Hb_002154_070 Hb_002154_070 Hb_001050_030--Hb_002154_070 Hb_002814_060 Hb_002814_060 Hb_001050_030--Hb_002814_060 Hb_000424_150 Hb_000424_150 Hb_001050_030--Hb_000424_150 Hb_003376_260 Hb_003376_260 Hb_001050_030--Hb_003376_260 Hb_041025_010--Hb_000082_020 Hb_046120_010 Hb_046120_010 Hb_041025_010--Hb_046120_010 Hb_114079_010 Hb_114079_010 Hb_041025_010--Hb_114079_010 Hb_183522_010 Hb_183522_010 Hb_041025_010--Hb_183522_010 Hb_010964_020 Hb_010964_020 Hb_041025_010--Hb_010964_020 Hb_169505_010 Hb_169505_010 Hb_041025_010--Hb_169505_010 Hb_007765_070 Hb_007765_070 Hb_004724_470--Hb_007765_070 Hb_000203_230 Hb_000203_230 Hb_004724_470--Hb_000203_230 Hb_083641_010 Hb_083641_010 Hb_004724_470--Hb_083641_010 Hb_004445_040 Hb_004445_040 Hb_004724_470--Hb_004445_040 Hb_000094_290 Hb_000094_290 Hb_004724_470--Hb_000094_290 Hb_010003_010 Hb_010003_010 Hb_004724_470--Hb_010003_010 Hb_000082_020--Hb_114079_010 Hb_000082_020--Hb_046120_010 Hb_007083_020 Hb_007083_020 Hb_000082_020--Hb_007083_020 Hb_000082_020--Hb_183522_010 Hb_106415_010 Hb_106415_010 Hb_000082_020--Hb_106415_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.37542 7.28419 9.08877 15.9024 2.2164 32.3616
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.2674 1.55162 3.81941 6.75314

CAGE analysis