Hb_000062_060

Information

Type transcription factor
Description TF Family: Orphans
Location Contig62: 48006-51522
Sequence    

Annotation

kegg
ID -
description -
nr
ID BAN99386.1
description multi-sensor hybrid histidine kinase [Plautia stali symbiont]
swissprot
ID -
description -
trembl
ID U3U586
description Multi-sensor hybrid histidine kinase OS=Plautia stali symbiont GN=E05_46200 PE=4 SV=1
Gene Ontology
ID GO:0000160
description two-component response regulator arr11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51400: 48827-49266 , PASA_asmbl_51401: 51486-57969 , PASA_asmbl_51402: 51398-57969
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_060 0.0 transcription factor TF Family: Orphans multi-sensor hybrid histidine kinase [Plautia stali symbiont]
2 Hb_037793_010 0.1292529533 - - PREDICTED: microtubule-associated protein 70-2-like [Jatropha curcas]
3 Hb_005144_030 0.1554433016 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
4 Hb_000136_190 0.1568788549 - - PREDICTED: protein-S-isoprenylcysteine O-methyltransferase A-like isoform X1 [Jatropha curcas]
5 Hb_011206_010 0.1607570419 - - PREDICTED: something about silencing protein 10 isoform X2 [Vitis vinifera]
6 Hb_001508_020 0.1608942973 - - myosin vIII, putative [Ricinus communis]
7 Hb_002815_060 0.1634079636 - - hypothetical protein B456_002G110500 [Gossypium raimondii]
8 Hb_008029_020 0.1654875902 - - PREDICTED: uncharacterized protein LOC105631777 [Jatropha curcas]
9 Hb_000486_060 0.1711279587 - - PREDICTED: immediate early response 3-interacting protein 1-like isoform X2 [Glycine max]
10 Hb_003388_100 0.1719352044 - - 16S rRNA processing protein RimM [Psychrobacter phenylpyruvicus]
11 Hb_003814_030 0.1719792472 - - PREDICTED: WAT1-related protein At5g47470-like isoform X2 [Jatropha curcas]
12 Hb_002742_070 0.17323081 - - PREDICTED: villin-4-like [Jatropha curcas]
13 Hb_000100_130 0.1734126062 - - hypothetical protein VITISV_026702 [Vitis vinifera]
14 Hb_011953_030 0.174316276 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0003s14450g [Populus trichocarpa]
15 Hb_121467_010 0.1773211919 - - tubulin-specific chaperone E, putative [Ricinus communis]
16 Hb_000997_410 0.1779939441 - - PREDICTED: uncharacterized protein LOC105632066 [Jatropha curcas]
17 Hb_001731_020 0.1802015157 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
18 Hb_003529_130 0.1826113488 - - PREDICTED: ribosome biogenesis protein BOP1 homolog isoform X1 [Jatropha curcas]
19 Hb_036702_010 0.1840266182 - - phosphoprotein phosphatase, putative [Ricinus communis]
20 Hb_088428_010 0.1862325849 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000062_060 Hb_000062_060 Hb_037793_010 Hb_037793_010 Hb_000062_060--Hb_037793_010 Hb_005144_030 Hb_005144_030 Hb_000062_060--Hb_005144_030 Hb_000136_190 Hb_000136_190 Hb_000062_060--Hb_000136_190 Hb_011206_010 Hb_011206_010 Hb_000062_060--Hb_011206_010 Hb_001508_020 Hb_001508_020 Hb_000062_060--Hb_001508_020 Hb_002815_060 Hb_002815_060 Hb_000062_060--Hb_002815_060 Hb_037793_010--Hb_011206_010 Hb_000021_020 Hb_000021_020 Hb_037793_010--Hb_000021_020 Hb_037793_010--Hb_001508_020 Hb_000085_090 Hb_000085_090 Hb_037793_010--Hb_000085_090 Hb_007456_010 Hb_007456_010 Hb_037793_010--Hb_007456_010 Hb_000330_160 Hb_000330_160 Hb_005144_030--Hb_000330_160 Hb_005144_030--Hb_002815_060 Hb_005260_040 Hb_005260_040 Hb_005144_030--Hb_005260_040 Hb_006501_020 Hb_006501_020 Hb_005144_030--Hb_006501_020 Hb_002742_070 Hb_002742_070 Hb_005144_030--Hb_002742_070 Hb_001369_350 Hb_001369_350 Hb_005144_030--Hb_001369_350 Hb_003814_030 Hb_003814_030 Hb_000136_190--Hb_003814_030 Hb_002370_040 Hb_002370_040 Hb_000136_190--Hb_002370_040 Hb_000136_190--Hb_000330_160 Hb_000136_190--Hb_001508_020 Hb_004657_090 Hb_004657_090 Hb_000136_190--Hb_004657_090 Hb_011206_010--Hb_002815_060 Hb_001731_020 Hb_001731_020 Hb_011206_010--Hb_001731_020 Hb_000213_070 Hb_000213_070 Hb_011206_010--Hb_000213_070 Hb_011206_010--Hb_000085_090 Hb_171788_010 Hb_171788_010 Hb_011206_010--Hb_171788_010 Hb_019053_020 Hb_019053_020 Hb_011206_010--Hb_019053_020 Hb_003529_130 Hb_003529_130 Hb_001508_020--Hb_003529_130 Hb_010925_020 Hb_010925_020 Hb_001508_020--Hb_010925_020 Hb_001508_020--Hb_001369_350 Hb_001508_020--Hb_000021_020 Hb_003894_040 Hb_003894_040 Hb_001508_020--Hb_003894_040 Hb_018202_050 Hb_018202_050 Hb_001508_020--Hb_018202_050 Hb_002815_060--Hb_002742_070 Hb_002815_060--Hb_001731_020 Hb_031069_020 Hb_031069_020 Hb_002815_060--Hb_031069_020 Hb_002903_080 Hb_002903_080 Hb_002815_060--Hb_002903_080 Hb_001040_120 Hb_001040_120 Hb_002815_060--Hb_001040_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.37969 1.10804 1.31723 1.50999 1.23043 4.29695
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.217595 0.256489 0.148391 1.65306 0.492262

CAGE analysis