Hb_172572_010

Information

Type -
Description -
Location Contig172572: 7-1033
Sequence    

Annotation

kegg
ID rcu:RCOM_2004830
description hypothetical protein
nr
ID XP_012088717.1
description PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
swissprot
ID Q8LG98
description Ubiquitin thioesterase otubain-like OS=Arabidopsis thaliana GN=At1g28120 PE=2 SV=2
trembl
ID A0A067JKE5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23096 PE=4 SV=1
Gene Ontology
ID GO:0016787
description ubiquitin thioesterase otubain-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_172572_010 0.0 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
2 Hb_094437_010 0.1794104849 - - -
3 Hb_036026_010 0.2615243292 transcription factor TF Family: FAR1 FAR-RED IMPAIRED RESPONSE [Medicago truncatula]
4 Hb_000915_150 0.2758406416 - - -
5 Hb_154381_010 0.2821981319 - - -
6 Hb_003551_040 0.2847135198 - - PREDICTED: uncharacterized protein LOC103331076 [Prunus mume]
7 Hb_010534_050 0.2985839434 - - PREDICTED: 40S ribosomal protein S7 [Jatropha curcas]
8 Hb_001489_140 0.3016635122 transcription factor TF Family: AP2 hypothetical protein JCGZ_21694 [Jatropha curcas]
9 Hb_169630_010 0.3051209789 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
10 Hb_030885_020 0.3053889686 - - -
11 Hb_004648_010 0.3100086662 - - UDP-galactose/UDP-glucose transporter 4 [Morus notabilis]
12 Hb_143800_010 0.3175771976 - - hypothetical protein POPTR_0010s21410g, partial [Populus trichocarpa]
13 Hb_002311_460 0.3231854683 - - ubiquitin-protein ligase, putative [Ricinus communis]
14 Hb_063480_010 0.3295560372 - - PREDICTED: endoribonuclease Dicer homolog 1-like isoform X2 [Pyrus x bretschneideri]
15 Hb_084858_010 0.3314547155 - - Uncharacterized protein isoform 3 [Theobroma cacao]
16 Hb_021068_030 0.335199435 transcription factor TF Family: M-type hypothetical protein B456_010G032700 [Gossypium raimondii]
17 Hb_000505_070 0.3367407777 - - PREDICTED: heparanase-like protein 3 isoform X1 [Jatropha curcas]
18 Hb_000415_070 0.3378598553 - - -
19 Hb_054541_010 0.3405184709 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
20 Hb_005542_100 0.3466141576 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0013s03910g [Populus trichocarpa]

Gene co-expression network

sample Hb_172572_010 Hb_172572_010 Hb_094437_010 Hb_094437_010 Hb_172572_010--Hb_094437_010 Hb_036026_010 Hb_036026_010 Hb_172572_010--Hb_036026_010 Hb_000915_150 Hb_000915_150 Hb_172572_010--Hb_000915_150 Hb_154381_010 Hb_154381_010 Hb_172572_010--Hb_154381_010 Hb_003551_040 Hb_003551_040 Hb_172572_010--Hb_003551_040 Hb_010534_050 Hb_010534_050 Hb_172572_010--Hb_010534_050 Hb_001032_030 Hb_001032_030 Hb_094437_010--Hb_001032_030 Hb_011781_040 Hb_011781_040 Hb_094437_010--Hb_011781_040 Hb_001278_080 Hb_001278_080 Hb_094437_010--Hb_001278_080 Hb_094437_010--Hb_010534_050 Hb_094437_010--Hb_154381_010 Hb_101376_010 Hb_101376_010 Hb_036026_010--Hb_101376_010 Hb_001258_070 Hb_001258_070 Hb_036026_010--Hb_001258_070 Hb_001898_170 Hb_001898_170 Hb_036026_010--Hb_001898_170 Hb_000737_020 Hb_000737_020 Hb_036026_010--Hb_000737_020 Hb_003159_060 Hb_003159_060 Hb_036026_010--Hb_003159_060 Hb_001489_140 Hb_001489_140 Hb_000915_150--Hb_001489_140 Hb_011377_010 Hb_011377_010 Hb_000915_150--Hb_011377_010 Hb_084858_010 Hb_084858_010 Hb_000915_150--Hb_084858_010 Hb_057247_010 Hb_057247_010 Hb_000915_150--Hb_057247_010 Hb_000849_050 Hb_000849_050 Hb_000915_150--Hb_000849_050 Hb_154381_010--Hb_003551_040 Hb_002311_460 Hb_002311_460 Hb_154381_010--Hb_002311_460 Hb_001832_220 Hb_001832_220 Hb_154381_010--Hb_001832_220 Hb_030885_020 Hb_030885_020 Hb_154381_010--Hb_030885_020 Hb_012539_090 Hb_012539_090 Hb_154381_010--Hb_012539_090 Hb_154381_010--Hb_000737_020 Hb_003551_040--Hb_002311_460 Hb_003551_040--Hb_001832_220 Hb_003551_040--Hb_030885_020 Hb_003551_040--Hb_012539_090 Hb_003551_040--Hb_000737_020 Hb_001050_060 Hb_001050_060 Hb_010534_050--Hb_001050_060 Hb_001711_050 Hb_001711_050 Hb_010534_050--Hb_001711_050 Hb_000928_050 Hb_000928_050 Hb_010534_050--Hb_000928_050 Hb_071869_010 Hb_071869_010 Hb_010534_050--Hb_071869_010 Hb_141296_010 Hb_141296_010 Hb_010534_050--Hb_141296_010 Hb_000206_190 Hb_000206_190 Hb_010534_050--Hb_000206_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.272558 0 0.287188 0.548793 0 0.585829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.366334 0

CAGE analysis