Hb_084858_010

Information

Type -
Description -
Location Contig84858: 208-803
Sequence    

Annotation

kegg
ID tcc:TCM_001427
description Uncharacterized protein isoform 1
nr
ID XP_007048323.1
description Uncharacterized protein isoform 3 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061DIV7
description Uncharacterized protein isoform 3 OS=Theobroma cacao GN=TCM_001427 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_084858_010 0.0 - - Uncharacterized protein isoform 3 [Theobroma cacao]
2 Hb_000724_030 0.2063795675 - - PREDICTED: uncharacterized protein LOC105645165 [Jatropha curcas]
3 Hb_000062_060 0.2305951536 transcription factor TF Family: Orphans multi-sensor hybrid histidine kinase [Plautia stali symbiont]
4 Hb_002232_150 0.2454000823 - - PREDICTED: squalene monooxygenase-like [Jatropha curcas]
5 Hb_007846_040 0.2495268017 - - PREDICTED: uncharacterized protein LOC105646691 [Jatropha curcas]
6 Hb_004724_120 0.2612440318 - - PREDICTED: ferredoxin, root R-B2 [Jatropha curcas]
7 Hb_000270_210 0.2645925421 - - PREDICTED: transcription initiation factor IIB-2-like [Jatropha curcas]
8 Hb_001014_130 0.2651386461 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
9 Hb_000915_150 0.2653375419 - - -
10 Hb_000217_060 0.2681871458 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_006769_010 0.2735946637 - - hypothetical protein JCGZ_00291 [Jatropha curcas]
12 Hb_021420_010 0.2762272762 - - hypothetical protein CICLE_v10029508mg [Citrus clementina]
13 Hb_134894_010 0.2799598783 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X2 [Gossypium raimondii]
14 Hb_000640_150 0.2916744048 transcription factor TF Family: WRKY conserved hypothetical protein [Ricinus communis]
15 Hb_004648_010 0.2917726324 - - UDP-galactose/UDP-glucose transporter 4 [Morus notabilis]
16 Hb_000733_270 0.2995004081 - - PREDICTED: serine/threonine-protein phosphatase PP1-alpha catalytic subunit [Dasypus novemcinctus]
17 Hb_011377_010 0.3002150019 - - PREDICTED: nudix hydrolase 12, mitochondrial-like [Populus euphratica]
18 Hb_000453_150 0.3017409396 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
19 Hb_129722_010 0.3054420402 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 3 [Jatropha curcas]
20 Hb_037793_010 0.3083407829 - - PREDICTED: microtubule-associated protein 70-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_084858_010 Hb_084858_010 Hb_000724_030 Hb_000724_030 Hb_084858_010--Hb_000724_030 Hb_000062_060 Hb_000062_060 Hb_084858_010--Hb_000062_060 Hb_002232_150 Hb_002232_150 Hb_084858_010--Hb_002232_150 Hb_007846_040 Hb_007846_040 Hb_084858_010--Hb_007846_040 Hb_004724_120 Hb_004724_120 Hb_084858_010--Hb_004724_120 Hb_000270_210 Hb_000270_210 Hb_084858_010--Hb_000270_210 Hb_001014_130 Hb_001014_130 Hb_000724_030--Hb_001014_130 Hb_000544_100 Hb_000544_100 Hb_000724_030--Hb_000544_100 Hb_004648_010 Hb_004648_010 Hb_000724_030--Hb_004648_010 Hb_002299_050 Hb_002299_050 Hb_000724_030--Hb_002299_050 Hb_000724_030--Hb_004724_120 Hb_037793_010 Hb_037793_010 Hb_000062_060--Hb_037793_010 Hb_005144_030 Hb_005144_030 Hb_000062_060--Hb_005144_030 Hb_000136_190 Hb_000136_190 Hb_000062_060--Hb_000136_190 Hb_011206_010 Hb_011206_010 Hb_000062_060--Hb_011206_010 Hb_001508_020 Hb_001508_020 Hb_000062_060--Hb_001508_020 Hb_002815_060 Hb_002815_060 Hb_000062_060--Hb_002815_060 Hb_002232_150--Hb_007846_040 Hb_002232_150--Hb_000270_210 Hb_010531_050 Hb_010531_050 Hb_002232_150--Hb_010531_050 Hb_000640_150 Hb_000640_150 Hb_002232_150--Hb_000640_150 Hb_005464_030 Hb_005464_030 Hb_002232_150--Hb_005464_030 Hb_164458_010 Hb_164458_010 Hb_002232_150--Hb_164458_010 Hb_007846_040--Hb_000640_150 Hb_000003_390 Hb_000003_390 Hb_007846_040--Hb_000003_390 Hb_001907_100 Hb_001907_100 Hb_007846_040--Hb_001907_100 Hb_054885_020 Hb_054885_020 Hb_007846_040--Hb_054885_020 Hb_059641_010 Hb_059641_010 Hb_007846_040--Hb_059641_010 Hb_000733_270 Hb_000733_270 Hb_004724_120--Hb_000733_270 Hb_000130_060 Hb_000130_060 Hb_004724_120--Hb_000130_060 Hb_001636_020 Hb_001636_020 Hb_004724_120--Hb_001636_020 Hb_000679_200 Hb_000679_200 Hb_004724_120--Hb_000679_200 Hb_002666_020 Hb_002666_020 Hb_004724_120--Hb_002666_020 Hb_004724_120--Hb_054885_020 Hb_005389_110 Hb_005389_110 Hb_000270_210--Hb_005389_110 Hb_000270_210--Hb_000640_150 Hb_018344_010 Hb_018344_010 Hb_000270_210--Hb_018344_010 Hb_116125_010 Hb_116125_010 Hb_000270_210--Hb_116125_010 Hb_002735_040 Hb_002735_040 Hb_000270_210--Hb_002735_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.43441 1.45957 1.44594 1.82477 0.372933 5.59316
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.181647 0 4.90801 0.346146

CAGE analysis