Hb_000003_390

Information

Type -
Description -
Location Contig3: 235569-238553
Sequence    

Annotation

kegg
ID pop:POPTR_0003s20040g
description POPTRDRAFT_647270; hypothetical protein
nr
ID XP_002304781.2
description hypothetical protein POPTR_0003s20040g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GWL2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s20040g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31415: 234989-238662
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_390 0.0 - - hypothetical protein POPTR_0003s20040g [Populus trichocarpa]
2 Hb_007257_050 0.1287634549 - - protein with unknown function [Ricinus communis]
3 Hb_003157_010 0.1579259882 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
4 Hb_000997_410 0.1590650149 - - PREDICTED: uncharacterized protein LOC105632066 [Jatropha curcas]
5 Hb_000375_370 0.1597708069 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
6 Hb_009028_030 0.1644597844 desease resistance Gene Name: NB-ARC NBS type disease resistance protein, putative [Theobroma cacao]
7 Hb_006501_020 0.166019135 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
8 Hb_001907_100 0.1678384039 - - PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
9 Hb_000265_250 0.1682985269 - - auxilin, putative [Ricinus communis]
10 Hb_181975_010 0.1688233398 - - PREDICTED: probable disease resistance protein At4g27220 [Populus euphratica]
11 Hb_006615_100 0.1692677228 - - PREDICTED: uncharacterized protein LOC105640683 isoform X1 [Jatropha curcas]
12 Hb_010128_070 0.1703853773 - - nucleic acid binding protein, putative [Ricinus communis]
13 Hb_007680_020 0.1718145419 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
14 Hb_003106_150 0.1758848672 - - PREDICTED: U-box domain-containing protein 38-like [Jatropha curcas]
15 Hb_084429_010 0.1759751922 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Populus euphratica]
16 Hb_031089_030 0.1775828609 - - ubiquitin-conjugating enzyme E2 28 [Arabidopsis thaliana]
17 Hb_010584_010 0.1781367522 - - PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]
18 Hb_011465_030 0.1783351233 - - PREDICTED: B2 protein [Jatropha curcas]
19 Hb_001493_010 0.1789893534 - - triacylglycerol acidic lipase TAL4 [Ricinus communis]
20 Hb_005122_060 0.18023776 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000003_390 Hb_000003_390 Hb_007257_050 Hb_007257_050 Hb_000003_390--Hb_007257_050 Hb_003157_010 Hb_003157_010 Hb_000003_390--Hb_003157_010 Hb_000997_410 Hb_000997_410 Hb_000003_390--Hb_000997_410 Hb_000375_370 Hb_000375_370 Hb_000003_390--Hb_000375_370 Hb_009028_030 Hb_009028_030 Hb_000003_390--Hb_009028_030 Hb_006501_020 Hb_006501_020 Hb_000003_390--Hb_006501_020 Hb_031089_030 Hb_031089_030 Hb_007257_050--Hb_031089_030 Hb_010584_010 Hb_010584_010 Hb_007257_050--Hb_010584_010 Hb_007257_050--Hb_009028_030 Hb_000265_250 Hb_000265_250 Hb_007257_050--Hb_000265_250 Hb_003349_010 Hb_003349_010 Hb_007257_050--Hb_003349_010 Hb_007257_050--Hb_003157_010 Hb_057451_010 Hb_057451_010 Hb_003157_010--Hb_057451_010 Hb_003157_010--Hb_006501_020 Hb_000808_070 Hb_000808_070 Hb_003157_010--Hb_000808_070 Hb_003157_010--Hb_009028_030 Hb_000640_200 Hb_000640_200 Hb_003157_010--Hb_000640_200 Hb_001989_020 Hb_001989_020 Hb_003157_010--Hb_001989_020 Hb_001731_020 Hb_001731_020 Hb_000997_410--Hb_001731_020 Hb_114984_010 Hb_114984_010 Hb_000997_410--Hb_114984_010 Hb_006615_100 Hb_006615_100 Hb_000997_410--Hb_006615_100 Hb_000261_290 Hb_000261_290 Hb_000997_410--Hb_000261_290 Hb_006588_050 Hb_006588_050 Hb_000997_410--Hb_006588_050 Hb_009620_030 Hb_009620_030 Hb_000997_410--Hb_009620_030 Hb_005122_060 Hb_005122_060 Hb_000375_370--Hb_005122_060 Hb_000375_370--Hb_031089_030 Hb_001247_140 Hb_001247_140 Hb_000375_370--Hb_001247_140 Hb_006816_410 Hb_006816_410 Hb_000375_370--Hb_006816_410 Hb_000375_370--Hb_006501_020 Hb_000365_060 Hb_000365_060 Hb_000375_370--Hb_000365_060 Hb_009028_030--Hb_057451_010 Hb_003710_040 Hb_003710_040 Hb_009028_030--Hb_003710_040 Hb_009028_030--Hb_000265_250 Hb_004899_070 Hb_004899_070 Hb_009028_030--Hb_004899_070 Hb_011465_030 Hb_011465_030 Hb_009028_030--Hb_011465_030 Hb_006501_020--Hb_000640_200 Hb_006501_020--Hb_006588_050 Hb_031069_020 Hb_031069_020 Hb_006501_020--Hb_031069_020 Hb_007904_180 Hb_007904_180 Hb_006501_020--Hb_007904_180 Hb_006501_020--Hb_004899_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
424.564 396.731 40.3108 83.8384 174.093 309.115
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
74.6666 12.0707 19.705 129.91 46.5042

CAGE analysis