Hb_002735_040

Information

Type -
Description -
Location Contig2735: 68000-73327
Sequence    

Annotation

kegg
ID rcu:RCOM_1078710
description kinase, putative
nr
ID XP_012085904.1
description PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
swissprot
ID Q9FE20
description Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1
trembl
ID A0A067K4W9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18017 PE=3 SV=1
Gene Ontology
ID GO:0004672
description wall-associated receptor kinase-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28559: 44612-70348 , PASA_asmbl_28560: 68879-70348 , PASA_asmbl_28561: 71538-71753 , PASA_asmbl_28562: 72410-72764
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002735_040 0.0 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
2 Hb_105085_010 0.1617541813 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
3 Hb_002804_050 0.1836859356 - - PREDICTED: uncharacterized protein LOC105628258 [Jatropha curcas]
4 Hb_006615_100 0.2033724646 - - PREDICTED: uncharacterized protein LOC105640683 isoform X1 [Jatropha curcas]
5 Hb_002843_050 0.2064519381 - - scab resistance family protein [Populus trichocarpa]
6 Hb_005122_060 0.2086563515 - - unnamed protein product [Vitis vinifera]
7 Hb_012384_050 0.2168169262 - - PREDICTED: uncharacterized protein LOC105641396 [Jatropha curcas]
8 Hb_000375_370 0.2216909336 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
9 Hb_011344_170 0.2224513723 - - PREDICTED: UDP-glucuronate 4-epimerase 4-like, partial [Camelina sativa]
10 Hb_010128_070 0.2226562478 - - nucleic acid binding protein, putative [Ricinus communis]
11 Hb_001749_010 0.22470956 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
12 Hb_000270_210 0.2261459959 - - PREDICTED: transcription initiation factor IIB-2-like [Jatropha curcas]
13 Hb_129067_010 0.2270468047 - - Cytochrome P450 superfamily protein [Theobroma cacao]
14 Hb_000997_410 0.2278382048 - - PREDICTED: uncharacterized protein LOC105632066 [Jatropha curcas]
15 Hb_001989_020 0.2285878062 - - hypothetical protein JCGZ_15521 [Jatropha curcas]
16 Hb_005122_080 0.2305672796 - - prokaryotic DNA topoisomerase, putative [Ricinus communis]
17 Hb_000342_090 0.232576506 - - PREDICTED: serine hydroxymethyltransferase 3, chloroplastic [Jatropha curcas]
18 Hb_003106_150 0.233021957 - - PREDICTED: U-box domain-containing protein 38-like [Jatropha curcas]
19 Hb_001529_060 0.2336094337 - - PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Jatropha curcas]
20 Hb_001632_010 0.2342663516 - - hypothetical protein JCGZ_05865 [Jatropha curcas]

Gene co-expression network

sample Hb_002735_040 Hb_002735_040 Hb_105085_010 Hb_105085_010 Hb_002735_040--Hb_105085_010 Hb_002804_050 Hb_002804_050 Hb_002735_040--Hb_002804_050 Hb_006615_100 Hb_006615_100 Hb_002735_040--Hb_006615_100 Hb_002843_050 Hb_002843_050 Hb_002735_040--Hb_002843_050 Hb_005122_060 Hb_005122_060 Hb_002735_040--Hb_005122_060 Hb_012384_050 Hb_012384_050 Hb_002735_040--Hb_012384_050 Hb_105085_010--Hb_002804_050 Hb_105085_010--Hb_005122_060 Hb_105085_010--Hb_002843_050 Hb_105085_010--Hb_006615_100 Hb_011344_170 Hb_011344_170 Hb_105085_010--Hb_011344_170 Hb_002804_050--Hb_006615_100 Hb_001529_060 Hb_001529_060 Hb_002804_050--Hb_001529_060 Hb_002849_080 Hb_002849_080 Hb_002804_050--Hb_002849_080 Hb_002783_050 Hb_002783_050 Hb_002804_050--Hb_002783_050 Hb_003106_150 Hb_003106_150 Hb_002804_050--Hb_003106_150 Hb_010128_070 Hb_010128_070 Hb_002804_050--Hb_010128_070 Hb_007680_020 Hb_007680_020 Hb_006615_100--Hb_007680_020 Hb_006615_100--Hb_010128_070 Hb_000281_010 Hb_000281_010 Hb_006615_100--Hb_000281_010 Hb_001195_150 Hb_001195_150 Hb_006615_100--Hb_001195_150 Hb_000997_410 Hb_000997_410 Hb_006615_100--Hb_000997_410 Hb_002843_050--Hb_002804_050 Hb_055773_010 Hb_055773_010 Hb_002843_050--Hb_055773_010 Hb_000735_120 Hb_000735_120 Hb_002843_050--Hb_000735_120 Hb_002843_050--Hb_005122_060 Hb_001259_030 Hb_001259_030 Hb_002843_050--Hb_001259_030 Hb_006816_410 Hb_006816_410 Hb_005122_060--Hb_006816_410 Hb_006588_050 Hb_006588_050 Hb_005122_060--Hb_006588_050 Hb_002105_080 Hb_002105_080 Hb_005122_060--Hb_002105_080 Hb_006816_300 Hb_006816_300 Hb_005122_060--Hb_006816_300 Hb_000375_370 Hb_000375_370 Hb_005122_060--Hb_000375_370 Hb_015763_020 Hb_015763_020 Hb_005122_060--Hb_015763_020 Hb_073212_010 Hb_073212_010 Hb_012384_050--Hb_073212_010 Hb_000365_260 Hb_000365_260 Hb_012384_050--Hb_000365_260 Hb_012384_050--Hb_006615_100 Hb_003064_030 Hb_003064_030 Hb_012384_050--Hb_003064_030 Hb_000815_140 Hb_000815_140 Hb_012384_050--Hb_000815_140 Hb_087221_010 Hb_087221_010 Hb_012384_050--Hb_087221_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.394 3.81753 1.16979 0.578195 2.74555 4.32832
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.616308 0.9161 1.36191 5.03832 0.230173

CAGE analysis