Hb_002783_050

Information

Type -
Description -
Location Contig2783: 60380-61486
Sequence    

Annotation

kegg
ID rcu:RCOM_1598280
description zinc finger protein, putative
nr
ID XP_002510553.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q9SPL2
description E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1
trembl
ID B9R8B0
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1598280 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase cip8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002783_050 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_000116_570 0.1238015778 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
3 Hb_001247_230 0.1343265735 - - nucleic acid binding protein, putative [Ricinus communis]
4 Hb_002804_050 0.136726545 - - PREDICTED: uncharacterized protein LOC105628258 [Jatropha curcas]
5 Hb_010883_080 0.1423107761 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Jatropha curcas]
6 Hb_006615_100 0.1428184388 - - PREDICTED: uncharacterized protein LOC105640683 isoform X1 [Jatropha curcas]
7 Hb_000281_010 0.14596055 - - hypothetical protein JCGZ_16194 [Jatropha curcas]
8 Hb_001703_130 0.1495481719 - - PREDICTED: vesicle transport v-SNARE 12-like [Populus euphratica]
9 Hb_000016_280 0.1563206435 - - Arginine/serine-rich splicing factor 35 [Theobroma cacao]
10 Hb_000093_130 0.1573108771 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
11 Hb_002849_080 0.1626590133 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
12 Hb_010128_070 0.1627014571 - - nucleic acid binding protein, putative [Ricinus communis]
13 Hb_101151_020 0.1647457208 - - DNA binding protein, putative [Ricinus communis]
14 Hb_001999_250 0.1662090981 - - PREDICTED: uncharacterized protein LOC105133073 isoform X1 [Populus euphratica]
15 Hb_021888_150 0.1678231249 - - -
16 Hb_000685_080 0.1707986025 - - protein binding protein, putative [Ricinus communis]
17 Hb_009355_030 0.171565789 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003349_010 0.1729939989 desease resistance Gene Name: NB-ARC hypothetical protein CICLE_v10023911mg [Citrus clementina]
19 Hb_001377_050 0.1737496579 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
20 Hb_002609_010 0.1739645689 - - PREDICTED: uncharacterized protein LOC105630866 [Jatropha curcas]

Gene co-expression network

sample Hb_002783_050 Hb_002783_050 Hb_000116_570 Hb_000116_570 Hb_002783_050--Hb_000116_570 Hb_001247_230 Hb_001247_230 Hb_002783_050--Hb_001247_230 Hb_002804_050 Hb_002804_050 Hb_002783_050--Hb_002804_050 Hb_010883_080 Hb_010883_080 Hb_002783_050--Hb_010883_080 Hb_006615_100 Hb_006615_100 Hb_002783_050--Hb_006615_100 Hb_000281_010 Hb_000281_010 Hb_002783_050--Hb_000281_010 Hb_000016_280 Hb_000016_280 Hb_000116_570--Hb_000016_280 Hb_000116_570--Hb_010883_080 Hb_000093_130 Hb_000093_130 Hb_000116_570--Hb_000093_130 Hb_000685_080 Hb_000685_080 Hb_000116_570--Hb_000685_080 Hb_001227_110 Hb_001227_110 Hb_000116_570--Hb_001227_110 Hb_009646_050 Hb_009646_050 Hb_000116_570--Hb_009646_050 Hb_001999_250 Hb_001999_250 Hb_001247_230--Hb_001999_250 Hb_002849_080 Hb_002849_080 Hb_001247_230--Hb_002849_080 Hb_148209_020 Hb_148209_020 Hb_001247_230--Hb_148209_020 Hb_000265_250 Hb_000265_250 Hb_001247_230--Hb_000265_250 Hb_002609_010 Hb_002609_010 Hb_001247_230--Hb_002609_010 Hb_001247_230--Hb_000116_570 Hb_002804_050--Hb_006615_100 Hb_001529_060 Hb_001529_060 Hb_002804_050--Hb_001529_060 Hb_002804_050--Hb_002849_080 Hb_003106_150 Hb_003106_150 Hb_002804_050--Hb_003106_150 Hb_010128_070 Hb_010128_070 Hb_002804_050--Hb_010128_070 Hb_001473_080 Hb_001473_080 Hb_010883_080--Hb_001473_080 Hb_010883_080--Hb_000016_280 Hb_010883_080--Hb_000685_080 Hb_001922_130 Hb_001922_130 Hb_010883_080--Hb_001922_130 Hb_000186_260 Hb_000186_260 Hb_010883_080--Hb_000186_260 Hb_007680_020 Hb_007680_020 Hb_006615_100--Hb_007680_020 Hb_006615_100--Hb_010128_070 Hb_006615_100--Hb_000281_010 Hb_001195_150 Hb_001195_150 Hb_006615_100--Hb_001195_150 Hb_000997_410 Hb_000997_410 Hb_006615_100--Hb_000997_410 Hb_000116_460 Hb_000116_460 Hb_000281_010--Hb_000116_460 Hb_000281_010--Hb_010128_070 Hb_000281_010--Hb_000685_080 Hb_001946_240 Hb_001946_240 Hb_000281_010--Hb_001946_240 Hb_000281_010--Hb_009646_050 Hb_000281_010--Hb_003106_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2548.22 1797.75 356.243 129.117 1807.88 1293.83
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
302.197 119.799 223.516 201.467 81.0675

CAGE analysis