Hb_000365_260

Information

Type -
Description -
Location Contig365: 250614-251228
Sequence    

Annotation

kegg
ID rcu:RCOM_0126930
description hypothetical protein
nr
ID XP_002531821.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T0Q2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0126930 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000365_260 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_162286_020 0.1188952318 - - PREDICTED: uncharacterized protein LOC105642702 [Jatropha curcas]
3 Hb_000179_200 0.1444470127 - - unnamed protein product [Vitis vinifera]
4 Hb_001268_210 0.1563865513 - - zinc finger protein, putative [Ricinus communis]
5 Hb_001916_120 0.1603093711 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
6 Hb_002027_220 0.1646888348 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
7 Hb_000465_120 0.1669385242 - - PREDICTED: uncharacterized protein LOC105632294 [Jatropha curcas]
8 Hb_012384_050 0.1709273091 - - PREDICTED: uncharacterized protein LOC105641396 [Jatropha curcas]
9 Hb_010560_060 0.1711766043 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
10 Hb_012977_010 0.1728118315 - - PREDICTED: uncharacterized protein LOC105131558 [Populus euphratica]
11 Hb_046931_010 0.1744595821 - - hypothetical protein JCGZ_26924 [Jatropha curcas]
12 Hb_000120_240 0.1771152784 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
13 Hb_012390_010 0.1781889966 - - pectate lyase 1 [Hevea brasiliensis]
14 Hb_000742_250 0.1790241891 - - Tubulin beta-6 chain [Gossypium arboreum]
15 Hb_000028_160 0.1793708975 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
16 Hb_003064_030 0.1811629276 - - bromodomain-containing protein, putative [Ricinus communis]
17 Hb_002157_190 0.1832309357 - - PREDICTED: mRNA turnover protein 4 homolog [Jatropha curcas]
18 Hb_000281_010 0.1835803533 - - hypothetical protein JCGZ_16194 [Jatropha curcas]
19 Hb_128496_010 0.1838465246 - - unnamed protein product [Vitis vinifera]
20 Hb_000849_150 0.1848304452 - - hypothetical protein JCGZ_15099 [Jatropha curcas]

Gene co-expression network

sample Hb_000365_260 Hb_000365_260 Hb_162286_020 Hb_162286_020 Hb_000365_260--Hb_162286_020 Hb_000179_200 Hb_000179_200 Hb_000365_260--Hb_000179_200 Hb_001268_210 Hb_001268_210 Hb_000365_260--Hb_001268_210 Hb_001916_120 Hb_001916_120 Hb_000365_260--Hb_001916_120 Hb_002027_220 Hb_002027_220 Hb_000365_260--Hb_002027_220 Hb_000465_120 Hb_000465_120 Hb_000365_260--Hb_000465_120 Hb_002276_050 Hb_002276_050 Hb_162286_020--Hb_002276_050 Hb_001474_030 Hb_001474_030 Hb_162286_020--Hb_001474_030 Hb_007305_010 Hb_007305_010 Hb_162286_020--Hb_007305_010 Hb_003064_030 Hb_003064_030 Hb_162286_020--Hb_003064_030 Hb_004678_060 Hb_004678_060 Hb_162286_020--Hb_004678_060 Hb_007451_050 Hb_007451_050 Hb_000179_200--Hb_007451_050 Hb_000566_100 Hb_000566_100 Hb_000179_200--Hb_000566_100 Hb_000742_250 Hb_000742_250 Hb_000179_200--Hb_000742_250 Hb_006649_080 Hb_006649_080 Hb_000179_200--Hb_006649_080 Hb_028358_010 Hb_028358_010 Hb_000179_200--Hb_028358_010 Hb_003216_110 Hb_003216_110 Hb_001268_210--Hb_003216_110 Hb_001268_210--Hb_002027_220 Hb_004143_070 Hb_004143_070 Hb_001268_210--Hb_004143_070 Hb_000165_130 Hb_000165_130 Hb_001268_210--Hb_000165_130 Hb_000197_210 Hb_000197_210 Hb_001268_210--Hb_000197_210 Hb_002475_050 Hb_002475_050 Hb_001268_210--Hb_002475_050 Hb_001138_010 Hb_001138_010 Hb_001916_120--Hb_001138_010 Hb_000252_090 Hb_000252_090 Hb_001916_120--Hb_000252_090 Hb_001277_410 Hb_001277_410 Hb_001916_120--Hb_001277_410 Hb_004324_240 Hb_004324_240 Hb_001916_120--Hb_004324_240 Hb_018954_020 Hb_018954_020 Hb_001916_120--Hb_018954_020 Hb_135810_010 Hb_135810_010 Hb_002027_220--Hb_135810_010 Hb_000120_240 Hb_000120_240 Hb_002027_220--Hb_000120_240 Hb_012977_010 Hb_012977_010 Hb_002027_220--Hb_012977_010 Hb_012390_010 Hb_012390_010 Hb_002027_220--Hb_012390_010 Hb_003654_010 Hb_003654_010 Hb_002027_220--Hb_003654_010 Hb_005322_030 Hb_005322_030 Hb_000465_120--Hb_005322_030 Hb_001498_030 Hb_001498_030 Hb_000465_120--Hb_001498_030 Hb_000849_150 Hb_000849_150 Hb_000465_120--Hb_000849_150 Hb_004531_090 Hb_004531_090 Hb_000465_120--Hb_004531_090 Hb_001408_090 Hb_001408_090 Hb_000465_120--Hb_001408_090 Hb_000465_120--Hb_000742_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
100.825 17.6078 12.4175 17.4613 30.846 48.5289
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5142 12.166 16.7879 3.44672 11.7435

CAGE analysis