Hb_162286_020

Information

Type -
Description -
Location Contig162286: 7072-13160
Sequence    

Annotation

kegg
ID tcc:TCM_004941
description hypothetical protein
nr
ID XP_012083005.1
description PREDICTED: uncharacterized protein LOC105642702 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K7U8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14111 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14669: 11676-11895
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_162286_020 0.0 - - PREDICTED: uncharacterized protein LOC105642702 [Jatropha curcas]
2 Hb_000365_260 0.1188952318 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002276_050 0.128697044 - - PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha curcas]
4 Hb_001474_030 0.1389344152 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
5 Hb_007305_010 0.1431774156 - - PREDICTED: girdin-like [Jatropha curcas]
6 Hb_003064_030 0.1443473262 - - bromodomain-containing protein, putative [Ricinus communis]
7 Hb_004678_060 0.1457522386 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
8 Hb_003216_110 0.1459761798 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
9 Hb_000025_750 0.1469916853 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
10 Hb_000640_320 0.1479450738 - - PREDICTED: uncharacterized protein LOC105642644 isoform X2 [Jatropha curcas]
11 Hb_000236_280 0.1483544817 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
12 Hb_000849_150 0.1484343294 - - hypothetical protein JCGZ_15099 [Jatropha curcas]
13 Hb_000230_370 0.1488590873 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
14 Hb_012977_010 0.1491864139 - - PREDICTED: uncharacterized protein LOC105131558 [Populus euphratica]
15 Hb_001268_210 0.1507630801 - - zinc finger protein, putative [Ricinus communis]
16 Hb_000740_070 0.1510162523 - - -
17 Hb_005237_060 0.1512035927 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
18 Hb_073171_080 0.1520650492 - - PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Jatropha curcas]
19 Hb_009404_010 0.1520783144 - - PREDICTED: casein kinase II subunit alpha-2-like [Glycine max]
20 Hb_005144_040 0.1526117762 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]

Gene co-expression network

sample Hb_162286_020 Hb_162286_020 Hb_000365_260 Hb_000365_260 Hb_162286_020--Hb_000365_260 Hb_002276_050 Hb_002276_050 Hb_162286_020--Hb_002276_050 Hb_001474_030 Hb_001474_030 Hb_162286_020--Hb_001474_030 Hb_007305_010 Hb_007305_010 Hb_162286_020--Hb_007305_010 Hb_003064_030 Hb_003064_030 Hb_162286_020--Hb_003064_030 Hb_004678_060 Hb_004678_060 Hb_162286_020--Hb_004678_060 Hb_000179_200 Hb_000179_200 Hb_000365_260--Hb_000179_200 Hb_001268_210 Hb_001268_210 Hb_000365_260--Hb_001268_210 Hb_001916_120 Hb_001916_120 Hb_000365_260--Hb_001916_120 Hb_002027_220 Hb_002027_220 Hb_000365_260--Hb_002027_220 Hb_000465_120 Hb_000465_120 Hb_000365_260--Hb_000465_120 Hb_002276_050--Hb_001474_030 Hb_073171_080 Hb_073171_080 Hb_002276_050--Hb_073171_080 Hb_033594_020 Hb_033594_020 Hb_002276_050--Hb_033594_020 Hb_002675_040 Hb_002675_040 Hb_002276_050--Hb_002675_040 Hb_000236_280 Hb_000236_280 Hb_002276_050--Hb_000236_280 Hb_000104_080 Hb_000104_080 Hb_002276_050--Hb_000104_080 Hb_000740_070 Hb_000740_070 Hb_001474_030--Hb_000740_070 Hb_001474_030--Hb_073171_080 Hb_001474_030--Hb_000236_280 Hb_002133_030 Hb_002133_030 Hb_001474_030--Hb_002133_030 Hb_001396_290 Hb_001396_290 Hb_001474_030--Hb_001396_290 Hb_001226_180 Hb_001226_180 Hb_007305_010--Hb_001226_180 Hb_003125_060 Hb_003125_060 Hb_007305_010--Hb_003125_060 Hb_007305_010--Hb_033594_020 Hb_007305_010--Hb_000236_280 Hb_000025_750 Hb_000025_750 Hb_007305_010--Hb_000025_750 Hb_007305_010--Hb_000104_080 Hb_009620_030 Hb_009620_030 Hb_003064_030--Hb_009620_030 Hb_080147_040 Hb_080147_040 Hb_003064_030--Hb_080147_040 Hb_035318_010 Hb_035318_010 Hb_003064_030--Hb_035318_010 Hb_121729_020 Hb_121729_020 Hb_003064_030--Hb_121729_020 Hb_000787_170 Hb_000787_170 Hb_003064_030--Hb_000787_170 Hb_010128_070 Hb_010128_070 Hb_003064_030--Hb_010128_070 Hb_002400_180 Hb_002400_180 Hb_004678_060--Hb_002400_180 Hb_003656_160 Hb_003656_160 Hb_004678_060--Hb_003656_160 Hb_009265_080 Hb_009265_080 Hb_004678_060--Hb_009265_080 Hb_008253_010 Hb_008253_010 Hb_004678_060--Hb_008253_010 Hb_002007_350 Hb_002007_350 Hb_004678_060--Hb_002007_350 Hb_003006_060 Hb_003006_060 Hb_004678_060--Hb_003006_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.3137 6.17499 2.4852 2.14231 9.49263 10.596
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.5445 3.87643 3.28888 1.36706 3.95354

CAGE analysis