Hb_000465_120

Information

Type -
Description -
Location Contig465: 83905-88475
Sequence    

Annotation

kegg
ID rcu:RCOM_0236300
description hypothetical protein
nr
ID XP_012070027.1
description PREDICTED: uncharacterized protein LOC105632294 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KY39
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03429 PE=4 SV=1
Gene Ontology
ID GO:0050290
description sphingomyelin phosphodiesterase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43962: 84030-86696 , PASA_asmbl_43963: 84030-85575 , PASA_asmbl_43965: 87637-87911
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000465_120 0.0 - - PREDICTED: uncharacterized protein LOC105632294 [Jatropha curcas]
2 Hb_005322_030 0.111492296 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
3 Hb_001498_030 0.1143174186 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
4 Hb_000849_150 0.1147955867 - - hypothetical protein JCGZ_15099 [Jatropha curcas]
5 Hb_004531_090 0.1193366361 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
6 Hb_001408_090 0.123568397 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
7 Hb_000742_250 0.125488857 - - Tubulin beta-6 chain [Gossypium arboreum]
8 Hb_024714_020 0.1258351787 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_000291_120 0.1266891207 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
10 Hb_001846_060 0.1267267049 - - hypothetical protein RCOM_0992860 [Ricinus communis]
11 Hb_004143_070 0.1284137539 - - cytochrome P450, putative [Ricinus communis]
12 Hb_033594_020 0.1289628262 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
13 Hb_005725_070 0.1300692609 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007305_010 0.1312196308 - - PREDICTED: girdin-like [Jatropha curcas]
15 Hb_046615_020 0.1338582097 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
16 Hb_011497_010 0.1338730885 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
17 Hb_000230_370 0.1339618353 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
18 Hb_003125_060 0.133980271 - - PREDICTED: snurportin-1 [Jatropha curcas]
19 Hb_000345_530 0.1341579478 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
20 Hb_007786_010 0.1343777937 - - PREDICTED: uncharacterized protein LOC100801920 [Glycine max]

Gene co-expression network

sample Hb_000465_120 Hb_000465_120 Hb_005322_030 Hb_005322_030 Hb_000465_120--Hb_005322_030 Hb_001498_030 Hb_001498_030 Hb_000465_120--Hb_001498_030 Hb_000849_150 Hb_000849_150 Hb_000465_120--Hb_000849_150 Hb_004531_090 Hb_004531_090 Hb_000465_120--Hb_004531_090 Hb_001408_090 Hb_001408_090 Hb_000465_120--Hb_001408_090 Hb_000742_250 Hb_000742_250 Hb_000465_120--Hb_000742_250 Hb_005803_010 Hb_005803_010 Hb_005322_030--Hb_005803_010 Hb_001196_070 Hb_001196_070 Hb_005322_030--Hb_001196_070 Hb_000345_530 Hb_000345_530 Hb_005322_030--Hb_000345_530 Hb_000976_080 Hb_000976_080 Hb_005322_030--Hb_000976_080 Hb_000281_100 Hb_000281_100 Hb_005322_030--Hb_000281_100 Hb_002133_030 Hb_002133_030 Hb_001498_030--Hb_002133_030 Hb_005144_040 Hb_005144_040 Hb_001498_030--Hb_005144_040 Hb_001969_040 Hb_001969_040 Hb_001498_030--Hb_001969_040 Hb_005725_070 Hb_005725_070 Hb_001498_030--Hb_005725_070 Hb_004724_360 Hb_004724_360 Hb_001498_030--Hb_004724_360 Hb_042083_070 Hb_042083_070 Hb_001498_030--Hb_042083_070 Hb_000025_750 Hb_000025_750 Hb_000849_150--Hb_000025_750 Hb_004032_460 Hb_004032_460 Hb_000849_150--Hb_004032_460 Hb_060437_010 Hb_060437_010 Hb_000849_150--Hb_060437_010 Hb_000849_150--Hb_001408_090 Hb_002897_040 Hb_002897_040 Hb_000849_150--Hb_002897_040 Hb_000849_150--Hb_005725_070 Hb_000779_040 Hb_000779_040 Hb_004531_090--Hb_000779_040 Hb_002025_140 Hb_002025_140 Hb_004531_090--Hb_002025_140 Hb_000291_120 Hb_000291_120 Hb_004531_090--Hb_000291_120 Hb_000211_090 Hb_000211_090 Hb_004531_090--Hb_000211_090 Hb_000573_040 Hb_000573_040 Hb_004531_090--Hb_000573_040 Hb_001034_020 Hb_001034_020 Hb_004531_090--Hb_001034_020 Hb_001408_090--Hb_000025_750 Hb_003216_110 Hb_003216_110 Hb_001408_090--Hb_003216_110 Hb_001227_110 Hb_001227_110 Hb_001408_090--Hb_001227_110 Hb_001408_090--Hb_002025_140 Hb_000331_480 Hb_000331_480 Hb_001408_090--Hb_000331_480 Hb_001408_090--Hb_001498_030 Hb_002400_270 Hb_002400_270 Hb_000742_250--Hb_002400_270 Hb_001846_060 Hb_001846_060 Hb_000742_250--Hb_001846_060 Hb_006649_080 Hb_006649_080 Hb_000742_250--Hb_006649_080 Hb_185467_010 Hb_185467_010 Hb_000742_250--Hb_185467_010 Hb_007786_010 Hb_007786_010 Hb_000742_250--Hb_007786_010 Hb_004096_020 Hb_004096_020 Hb_000742_250--Hb_004096_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.5055 7.75264 6.93437 5.70536 30.8735 27.8535
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.36715 5.54157 12.2045 6.72868 4.67177

CAGE analysis