Hb_000742_250

Information

Type -
Description -
Location Contig742: 226042-229684
Sequence    

Annotation

kegg
ID gmx:100818878
description tubulin beta-3 chain-like
nr
ID KHG21743.1
description Tubulin beta-6 chain [Gossypium arboreum]
swissprot
ID P28551
description Tubulin beta chain (Fragment) OS=Glycine max GN=TUBB PE=2 SV=2
trembl
ID A0A0B0P4U1
description Tubulin beta-6 chain OS=Gossypium arboreum GN=F383_09979 PE=3 SV=1
Gene Ontology
ID GO:0005737
description tubulin beta-1 chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56507: 225794-229511 , PASA_asmbl_56509: 228126-228691 , PASA_asmbl_56510: 226932-227278
cDNA
(Sanger)
(ID:Location)		 003_H19.ab1: 226632-229511 , 017_A12.ab1: 229006-229498 , 019_G02.ab1: 227394-229508 , 031_A16.ab1: 226685-229510

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000742_250 0.0 - - Tubulin beta-6 chain [Gossypium arboreum]
2 Hb_002400_270 0.0929843927 - - PREDICTED: probable sucrose-phosphate synthase 1 isoform X1 [Jatropha curcas]
3 Hb_001846_060 0.1000304999 - - hypothetical protein RCOM_0992860 [Ricinus communis]
4 Hb_006649_080 0.108970581 - - PREDICTED: uncharacterized protein LOC105640496 [Jatropha curcas]
5 Hb_185467_010 0.1099188509 - - -
6 Hb_007786_010 0.1158835085 - - PREDICTED: uncharacterized protein LOC100801920 [Glycine max]
7 Hb_004096_020 0.1183735935 - - PREDICTED: KH domain-containing protein At4g18375-like, partial [Fragaria vesca subsp. vesca]
8 Hb_004128_080 0.1191853722 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
9 Hb_009404_010 0.1207631658 - - PREDICTED: casein kinase II subunit alpha-2-like [Glycine max]
10 Hb_000369_060 0.1216312251 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
11 Hb_000465_120 0.125488857 - - PREDICTED: uncharacterized protein LOC105632294 [Jatropha curcas]
12 Hb_080147_030 0.1276880114 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X3 [Jatropha curcas]
13 Hb_046615_020 0.1280813226 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
14 Hb_002818_040 0.1296964361 - - tRNA synthetase-related family protein [Populus trichocarpa]
15 Hb_003656_160 0.130851543 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]
16 Hb_003878_120 0.1314317341 transcription factor TF Family: MBF1 PREDICTED: multiprotein-bridging factor 1b-like [Elaeis guineensis]
17 Hb_002874_070 0.1316699878 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
18 Hb_011639_050 0.1317411547 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004993_010 0.1325828376 - - PREDICTED: uncharacterized protein LOC104889591 [Beta vulgaris subsp. vulgaris]
20 Hb_000291_120 0.1326739171 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]

Gene co-expression network

sample Hb_000742_250 Hb_000742_250 Hb_002400_270 Hb_002400_270 Hb_000742_250--Hb_002400_270 Hb_001846_060 Hb_001846_060 Hb_000742_250--Hb_001846_060 Hb_006649_080 Hb_006649_080 Hb_000742_250--Hb_006649_080 Hb_185467_010 Hb_185467_010 Hb_000742_250--Hb_185467_010 Hb_007786_010 Hb_007786_010 Hb_000742_250--Hb_007786_010 Hb_004096_020 Hb_004096_020 Hb_000742_250--Hb_004096_020 Hb_000327_240 Hb_000327_240 Hb_002400_270--Hb_000327_240 Hb_011316_110 Hb_011316_110 Hb_002400_270--Hb_011316_110 Hb_002818_040 Hb_002818_040 Hb_002400_270--Hb_002818_040 Hb_000369_060 Hb_000369_060 Hb_002400_270--Hb_000369_060 Hb_001416_040 Hb_001416_040 Hb_002400_270--Hb_001416_040 Hb_001846_060--Hb_002400_270 Hb_001846_060--Hb_000369_060 Hb_011644_020 Hb_011644_020 Hb_001846_060--Hb_011644_020 Hb_001846_060--Hb_007786_010 Hb_001846_060--Hb_011316_110 Hb_006649_080--Hb_185467_010 Hb_033834_010 Hb_033834_010 Hb_006649_080--Hb_033834_010 Hb_000359_250 Hb_000359_250 Hb_006649_080--Hb_000359_250 Hb_003878_120 Hb_003878_120 Hb_006649_080--Hb_003878_120 Hb_006649_080--Hb_004096_020 Hb_024714_020 Hb_024714_020 Hb_185467_010--Hb_024714_020 Hb_000721_010 Hb_000721_010 Hb_185467_010--Hb_000721_010 Hb_004993_010 Hb_004993_010 Hb_185467_010--Hb_004993_010 Hb_000046_300 Hb_000046_300 Hb_185467_010--Hb_000046_300 Hb_001936_050 Hb_001936_050 Hb_185467_010--Hb_001936_050 Hb_002874_070 Hb_002874_070 Hb_185467_010--Hb_002874_070 Hb_007786_010--Hb_002818_040 Hb_012977_010 Hb_012977_010 Hb_007786_010--Hb_012977_010 Hb_000300_540 Hb_000300_540 Hb_007786_010--Hb_000300_540 Hb_009421_100 Hb_009421_100 Hb_007786_010--Hb_009421_100 Hb_006029_010 Hb_006029_010 Hb_007786_010--Hb_006029_010 Hb_005725_070 Hb_005725_070 Hb_007786_010--Hb_005725_070 Hb_046615_020 Hb_046615_020 Hb_004096_020--Hb_046615_020 Hb_001871_040 Hb_001871_040 Hb_004096_020--Hb_001871_040 Hb_003406_040 Hb_003406_040 Hb_004096_020--Hb_003406_040 Hb_123777_030 Hb_123777_030 Hb_004096_020--Hb_123777_030 Hb_000195_020 Hb_000195_020 Hb_004096_020--Hb_000195_020 Hb_000357_080 Hb_000357_080 Hb_004096_020--Hb_000357_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1455.39 309.22 271.257 185.966 1094.18 1030.23
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
377.107 229.149 776.101 126.55 355.683

CAGE analysis