Hb_004993_010

Information

Type -
Description -
Location Contig4993: 23188-27401
Sequence    

Annotation

kegg
ID bvg:104889591
description uncharacterized LOC104889591
nr
ID XP_010673150.1
description PREDICTED: uncharacterized protein LOC104889591 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID F4NCJ8
description Putative uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45608: 22850-23022
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004993_010 0.0 - - PREDICTED: uncharacterized protein LOC104889591 [Beta vulgaris subsp. vulgaris]
2 Hb_150528_010 0.0900212274 - - conserved hypothetical protein [Ricinus communis]
3 Hb_041091_010 0.0995535691 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
4 Hb_185467_010 0.1002813165 - - -
5 Hb_007786_010 0.1024602065 - - PREDICTED: uncharacterized protein LOC100801920 [Glycine max]
6 Hb_004852_030 0.1040310581 - - PREDICTED: uncharacterized protein LOC105639923 [Jatropha curcas]
7 Hb_001416_040 0.1054457642 - - acid phosphatase, putative [Ricinus communis]
8 Hb_004102_100 0.1065199163 - - PREDICTED: periodic tryptophan protein 2 homolog [Jatropha curcas]
9 Hb_000284_200 0.1067659432 - - -
10 Hb_002631_050 0.1084052641 - - membrane associated ring finger 1,8, putative [Ricinus communis]
11 Hb_000281_100 0.1085057439 - - PREDICTED: putative RNA methyltransferase At5g10620 [Jatropha curcas]
12 Hb_002818_040 0.1089209866 - - tRNA synthetase-related family protein [Populus trichocarpa]
13 Hb_002400_270 0.1094778643 - - PREDICTED: probable sucrose-phosphate synthase 1 isoform X1 [Jatropha curcas]
14 Hb_024714_020 0.1117967428 - - WD-repeat protein, putative [Ricinus communis]
15 Hb_017168_010 0.1127673489 - - conserved hypothetical protein [Ricinus communis]
16 Hb_185467_020 0.1132434735 - - Cucumisin precursor, putative [Ricinus communis]
17 Hb_000803_150 0.1135554804 - - PREDICTED: uncharacterized protein LOC105648311 isoform X2 [Jatropha curcas]
18 Hb_000327_240 0.113595864 - - PREDICTED: interaptin-like [Jatropha curcas]
19 Hb_011496_010 0.1136497362 - - PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]
20 Hb_001936_050 0.1139185613 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Prunus mume]

Gene co-expression network

sample Hb_004993_010 Hb_004993_010 Hb_150528_010 Hb_150528_010 Hb_004993_010--Hb_150528_010 Hb_041091_010 Hb_041091_010 Hb_004993_010--Hb_041091_010 Hb_185467_010 Hb_185467_010 Hb_004993_010--Hb_185467_010 Hb_007786_010 Hb_007786_010 Hb_004993_010--Hb_007786_010 Hb_004852_030 Hb_004852_030 Hb_004993_010--Hb_004852_030 Hb_001416_040 Hb_001416_040 Hb_004993_010--Hb_001416_040 Hb_004102_100 Hb_004102_100 Hb_150528_010--Hb_004102_100 Hb_150528_010--Hb_041091_010 Hb_150528_010--Hb_004852_030 Hb_000175_390 Hb_000175_390 Hb_150528_010--Hb_000175_390 Hb_024714_020 Hb_024714_020 Hb_150528_010--Hb_024714_020 Hb_001584_110 Hb_001584_110 Hb_041091_010--Hb_001584_110 Hb_000803_150 Hb_000803_150 Hb_041091_010--Hb_000803_150 Hb_001871_040 Hb_001871_040 Hb_041091_010--Hb_001871_040 Hb_000077_050 Hb_000077_050 Hb_041091_010--Hb_000077_050 Hb_001504_160 Hb_001504_160 Hb_041091_010--Hb_001504_160 Hb_000076_080 Hb_000076_080 Hb_041091_010--Hb_000076_080 Hb_185467_010--Hb_024714_020 Hb_000721_010 Hb_000721_010 Hb_185467_010--Hb_000721_010 Hb_000046_300 Hb_000046_300 Hb_185467_010--Hb_000046_300 Hb_001936_050 Hb_001936_050 Hb_185467_010--Hb_001936_050 Hb_002874_070 Hb_002874_070 Hb_185467_010--Hb_002874_070 Hb_002818_040 Hb_002818_040 Hb_007786_010--Hb_002818_040 Hb_012977_010 Hb_012977_010 Hb_007786_010--Hb_012977_010 Hb_000300_540 Hb_000300_540 Hb_007786_010--Hb_000300_540 Hb_009421_100 Hb_009421_100 Hb_007786_010--Hb_009421_100 Hb_006029_010 Hb_006029_010 Hb_007786_010--Hb_006029_010 Hb_005725_070 Hb_005725_070 Hb_007786_010--Hb_005725_070 Hb_004852_030--Hb_000803_150 Hb_002007_270 Hb_002007_270 Hb_004852_030--Hb_002007_270 Hb_185467_020 Hb_185467_020 Hb_004852_030--Hb_185467_020 Hb_066807_010 Hb_066807_010 Hb_004852_030--Hb_066807_010 Hb_000165_030 Hb_000165_030 Hb_004852_030--Hb_000165_030 Hb_001981_070 Hb_001981_070 Hb_004852_030--Hb_001981_070 Hb_006816_290 Hb_006816_290 Hb_001416_040--Hb_006816_290 Hb_000327_240 Hb_000327_240 Hb_001416_040--Hb_000327_240 Hb_000984_180 Hb_000984_180 Hb_001416_040--Hb_000984_180 Hb_002400_270 Hb_002400_270 Hb_001416_040--Hb_002400_270 Hb_000491_080 Hb_000491_080 Hb_001416_040--Hb_000491_080 Hb_001433_170 Hb_001433_170 Hb_001416_040--Hb_001433_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.03678 0.211006 0.247172 0.0722424 1.12033 1.20785
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.331059 0.485508 0.633887 0.145628 0.201993

CAGE analysis